Variant report

Variant	rs12498346
Chromosome Location	chr4:86891199-86891200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86717537..86719169-chr4:86889518..86891294,13	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11724681	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[ASN][1000 genomes]
rs346504	1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86854000-86893000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:86854200-86893000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86854200-86915800	Weak transcription	Left Ventricle	heart
4	chr4:86863600-86902000	Weak transcription	Pancreas	Pancrea
5	chr4:86875000-86891200	Weak transcription	Right Atrium	heart
6	chr4:86875200-86915800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:86878000-86893200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr4:86880600-86915800	Weak transcription	Gastric	stomach
9	chr4:86882000-86892000	Enhancers	NHDF-Ad	bronchial
10	chr4:86885000-86915600	Weak transcription	Fetal Lung	lung
11	chr4:86885600-86891800	Enhancers	HUVEC	blood vessel
12	chr4:86886800-86893000	Weak transcription	Primary B cells from cord blood	blood
13	chr4:86887000-86893200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:86887400-86892000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:86887600-86891200	Weak transcription	Spleen	Spleen
16	chr4:86887600-86893000	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:86887600-86915600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:86888200-86892400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:86888200-86899200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:86888600-86892000	Enhancers	HSMM	muscle
21	chr4:86888800-86919200	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:86889000-86892000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:86889000-86892200	Enhancers	Osteobl	bone
24	chr4:86889200-86891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr4:86889200-86891400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr4:86889200-86893400	Weak transcription	Ovary	ovary
27	chr4:86889400-86915800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr4:86889400-86935000	Weak transcription	Psoas Muscle	Psoas
29	chr4:86889600-86891200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:86889600-86891200	Weak transcription	Adipose Nuclei	Adipose
31	chr4:86889600-86891200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:86889600-86891600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:86889600-86892000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr4:86889600-86893200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr4:86889600-86904000	Weak transcription	Aorta	Aorta
36	chr4:86889800-86892400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:86890000-86892000	Enhancers	Fetal Kidney	kidney
38	chr4:86890400-86901800	Weak transcription	Liver	Liver
39	chr4:86890400-86916000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:86890600-86892000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:86890800-86891400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:86890800-86891400	Enhancers	HSMMtube	muscle
43	chr4:86890800-86892000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:86890800-86892000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr4:86890800-86892000	Enhancers	Stomach Mucosa	stomach
46	chr4:86891000-86891800	Weak transcription	NH-A	brain
47	chr4:86891000-86891800	Weak transcription	NHLF	lung

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