Variant report

Variant	rs12498606
Chromosome Location	chr4:87752188-87752189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 179 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:178)

rs_ID	r²[population]
rs10000226	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10000891	0.86[EUR][1000 genomes]
rs10001010	0.86[EUR][1000 genomes]
rs10001986	0.86[EUR][1000 genomes]
rs10002511	0.95[EUR][1000 genomes]
rs10003989	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10009309	0.95[EUR][1000 genomes]
rs10009603	0.86[EUR][1000 genomes]
rs10009758	0.95[EUR][1000 genomes]
rs10009789	0.95[EUR][1000 genomes]
rs10013048	0.86[EUR][1000 genomes]
rs10013114	0.95[EUR][1000 genomes]
rs10013467	0.83[EUR][1000 genomes]
rs10013878	0.95[EUR][1000 genomes]
rs10013988	0.95[EUR][1000 genomes]
rs10015000	0.86[EUR][1000 genomes]
rs10016082	0.95[EUR][1000 genomes]
rs10016120	0.86[EUR][1000 genomes]
rs10016124	0.86[EUR][1000 genomes]
rs10016456	0.97[EUR][1000 genomes]
rs10020590	0.86[EUR][1000 genomes]
rs10021168	0.92[EUR][1000 genomes]
rs10023163	0.82[EUR][1000 genomes]
rs10024496	0.93[EUR][1000 genomes]
rs10024631	0.92[EUR][1000 genomes]
rs10024860	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10026645	0.90[EUR][1000 genomes]
rs10028003	0.95[EUR][1000 genomes]
rs10028357	0.86[EUR][1000 genomes]
rs10028550	0.86[EUR][1000 genomes]
rs10029055	0.95[EUR][1000 genomes]
rs10029565	0.86[EUR][1000 genomes]
rs10030981	0.95[EUR][1000 genomes]
rs10032126	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10032979	0.86[EUR][1000 genomes]
rs10033029	0.85[EUR][1000 genomes]
rs10033679	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10084899	0.81[EUR][1000 genomes]
rs10084902	0.95[EUR][1000 genomes]
rs10084954	0.95[EUR][1000 genomes]
rs10212681	0.91[EUR][1000 genomes]
rs10212723	0.88[EUR][1000 genomes]
rs10213021	0.88[EUR][1000 genomes]
rs10213484	0.95[EUR][1000 genomes]
rs10213632	0.88[EUR][1000 genomes]
rs1038290	0.86[EUR][1000 genomes]
rs10470883	0.83[EUR][1000 genomes]
rs10470933	0.81[EUR][1000 genomes]
rs10516780	0.83[EUR][1000 genomes]
rs10516783	0.95[EUR][1000 genomes]
rs10516784	0.95[EUR][1000 genomes]
rs11097118	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11097119	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11097120	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11947598	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12171330	0.95[EUR][1000 genomes]
rs12171331	0.95[EUR][1000 genomes]
rs12171388	0.93[EUR][1000 genomes]
rs12171414	0.95[EUR][1000 genomes]
rs12171415	0.95[EUR][1000 genomes]
rs12171445	0.95[EUR][1000 genomes]
rs12171459	0.95[EUR][1000 genomes]
rs12171474	0.95[EUR][1000 genomes]
rs12498681	0.88[EUR][1000 genomes]
rs12499471	0.92[EUR][1000 genomes]
rs12499477	0.95[EUR][1000 genomes]
rs12499575	0.86[EUR][1000 genomes]
rs12499984	0.86[EUR][1000 genomes]
rs12499991	0.95[EUR][1000 genomes]
rs12500797	0.92[EUR][1000 genomes]
rs12502376	0.86[EUR][1000 genomes]
rs12504551	0.97[EUR][1000 genomes]
rs12507034	0.92[EUR][1000 genomes]
rs12507163	0.95[EUR][1000 genomes]
rs12508339	0.83[EUR][1000 genomes]
rs12508746	0.86[EUR][1000 genomes]
rs12509560	0.92[EUR][1000 genomes]
rs12511153	0.86[EUR][1000 genomes]
rs12511318	0.95[EUR][1000 genomes]
rs12512858	0.88[EUR][1000 genomes]
rs12710827	0.95[EUR][1000 genomes]
rs13108571	0.95[EUR][1000 genomes]
rs13108581	0.95[EUR][1000 genomes]
rs13108735	0.95[EUR][1000 genomes]
rs13109164	0.95[EUR][1000 genomes]
rs13110760	0.88[EUR][1000 genomes]
rs13111757	0.83[EUR][1000 genomes]
rs13112139	0.86[EUR][1000 genomes]
rs13112150	0.86[EUR][1000 genomes]
rs13115122	0.95[EUR][1000 genomes]
rs13115681	0.95[EUR][1000 genomes]
rs13117481	0.83[EUR][1000 genomes]
rs13118632	0.95[EUR][1000 genomes]
rs13120724	0.95[EUR][1000 genomes]
rs13136201	0.95[EUR][1000 genomes]
rs13148078	0.92[EUR][1000 genomes]
rs13148807	0.93[EUR][1000 genomes]
rs13149431	0.95[EUR][1000 genomes]
rs13152382	0.83[EUR][1000 genomes]
rs1420620	0.82[EUR][1000 genomes]
rs1420622	0.97[EUR][1000 genomes]
rs1420623	0.97[EUR][1000 genomes]
rs17454432	0.86[EUR][1000 genomes]
rs17454655	0.86[EUR][1000 genomes]
rs17694358	0.97[EUR][1000 genomes]
rs17750575	0.97[EUR][1000 genomes]
rs28409669	0.94[EUR][1000 genomes]
rs28411302	0.90[EUR][1000 genomes]
rs28416315	0.83[EUR][1000 genomes]
rs28417582	0.95[EUR][1000 genomes]
rs28421178	0.84[EUR][1000 genomes]
rs28441099	0.92[EUR][1000 genomes]
rs28448567	0.92[EUR][1000 genomes]
rs28455719	0.97[EUR][1000 genomes]
rs28483600	0.94[EUR][1000 genomes]
rs28491390	0.95[EUR][1000 genomes]
rs28502328	0.92[EUR][1000 genomes]
rs28535818	0.88[EUR][1000 genomes]
rs28545322	0.86[EUR][1000 genomes]
rs28548225	0.85[EUR][1000 genomes]
rs28558568	0.95[EUR][1000 genomes]
rs28570548	0.92[EUR][1000 genomes]
rs28572183	0.95[EUR][1000 genomes]
rs28572787	0.95[EUR][1000 genomes]
rs28578632	0.83[EUR][1000 genomes]
rs28587332	0.92[EUR][1000 genomes]
rs28610135	0.95[EUR][1000 genomes]
rs28619493	0.95[EUR][1000 genomes]
rs28623441	0.95[EUR][1000 genomes]
rs28631999	0.97[EUR][1000 genomes]
rs28634740	0.92[EUR][1000 genomes]
rs28645624	0.83[EUR][1000 genomes]
rs28663463	0.92[EUR][1000 genomes]
rs28674577	0.86[EUR][1000 genomes]
rs28682899	0.86[EUR][1000 genomes]
rs28696860	0.95[EUR][1000 genomes]
rs28710769	0.95[EUR][1000 genomes]
rs28785508	0.86[EUR][1000 genomes]
rs28785868	0.86[EUR][1000 genomes]
rs28833029	0.86[EUR][1000 genomes]
rs28846800	0.86[EUR][1000 genomes]
rs28868582	0.86[EUR][1000 genomes]
rs28877076	0.95[EUR][1000 genomes]
rs34178790	0.95[EUR][1000 genomes]
rs34320168	0.95[EUR][1000 genomes]
rs34371873	0.86[EUR][1000 genomes]
rs35254293	0.95[EUR][1000 genomes]
rs35323910	0.95[EUR][1000 genomes]
rs35355289	0.86[EUR][1000 genomes]
rs35528563	0.86[EUR][1000 genomes]
rs35915886	0.97[EUR][1000 genomes]
rs35982123	0.95[EUR][1000 genomes]
rs66584788	0.95[EUR][1000 genomes]
rs67067959	0.95[EUR][1000 genomes]
rs6817630	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71605612	0.83[EUR][1000 genomes]
rs71605613	0.86[EUR][1000 genomes]
rs71605614	0.86[EUR][1000 genomes]
rs71605615	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71605617	0.92[EUR][1000 genomes]
rs71605618	0.95[EUR][1000 genomes]
rs71633353	0.86[EUR][1000 genomes]
rs7664147	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7664860	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7698481	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7699564	0.84[AMR][1000 genomes]
rs9307022	0.90[EUR][1000 genomes]
rs9307023	0.90[EUR][1000 genomes]
rs9307024	0.95[EUR][1000 genomes]
rs9884784	0.95[EUR][1000 genomes]
rs9985645	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9990536	0.95[EUR][1000 genomes]
rs9993492	0.95[EUR][1000 genomes]
rs9993838	0.95[EUR][1000 genomes]
rs9994213	0.95[EUR][1000 genomes]
rs9997271	0.92[EUR][1000 genomes]
rs9997453	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9999866	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87731200-87756000	Weak transcription	Pancreas	Pancrea
2	chr4:87732400-87760000	Weak transcription	Psoas Muscle	Psoas
3	chr4:87737600-87752600	Weak transcription	Esophagus	oesophagus
4	chr4:87737800-87754800	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:87739800-87757600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:87740200-87755200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:87741200-87752200	Weak transcription	Fetal Lung	lung
8	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
9	chr4:87745400-87757400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:87747400-87752200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:87750200-87752200	Weak transcription	Adipose Nuclei	Adipose
12	chr4:87751000-87752400	Enhancers	Hela-S3	cervix
13	chr4:87751200-87752200	Enhancers	HMEC	breast
14	chr4:87751200-87752600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:87751200-87753600	Strong transcription	Left Ventricle	heart
16	chr4:87751200-87754400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:87751400-87752600	Genic enhancers	NHEK	skin
18	chr4:87751600-87752400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:87751600-87752400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:87751600-87752400	Enhancers	NHDF-Ad	bronchial
21	chr4:87751600-87752600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:87751600-87753000	Enhancers	Ovary	ovary
23	chr4:87751600-87753400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:87751600-87753400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:87751600-87753600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:87751600-87753800	Enhancers	NHLF	lung
27	chr4:87751800-87752600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:87751800-87752600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr4:87752000-87752600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:87752000-87752800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:87752000-87753200	Enhancers	HSMMtube	muscle
32	chr4:87752000-87753200	Enhancers	NH-A	brain

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