Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10010772	1.00[CHB][hapmap]
rs12498497	0.88[EUR][1000 genomes]
rs12498873	0.85[EUR][1000 genomes]
rs12499329	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12500163	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12500808	1.00[EUR][1000 genomes]
rs12501558	0.89[EUR][1000 genomes]
rs12502920	0.94[EUR][1000 genomes]
rs12504420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506296	1.00[EUR][1000 genomes]
rs12507170	1.00[EUR][1000 genomes]
rs12509337	1.00[EUR][1000 genomes]
rs12509521	1.00[EUR][1000 genomes]
rs12510307	1.00[EUR][1000 genomes]
rs17016755	1.00[JPT][hapmap]
rs2053574	1.00[EUR][1000 genomes]
rs2289792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58027630	0.94[EUR][1000 genomes]
rs6835316	1.00[CHB][hapmap]
rs7670737	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7689139	1.00[JPT][hapmap]
rs7697637	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143663800-143665200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:143664000-143665000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:143664200-143664800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:143664200-143664800	Enhancers	NH-A	brain
5	chr4:143664200-143665000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:143664200-143665000	Enhancers	Fetal Heart	heart
7	chr4:143664200-143665000	Enhancers	Stomach Mucosa	stomach
8	chr4:143664200-143665000	Enhancers	HUVEC	blood vessel
9	chr4:143664200-143667800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:143664400-143664800	Enhancers	Gastric	stomach
11	chr4:143664400-143664800	Enhancers	NHLF	lung
12	chr4:143664400-143665000	Enhancers	Hela-S3	cervix
13	chr4:143664400-143665000	Enhancers	HMEC	breast
14	chr4:143664400-143665000	Enhancers	NHDF-Ad	bronchial
15	chr4:143664400-143665000	Enhancers	Osteobl	bone
16	chr4:143664600-143665000	Active TSS	Aorta	Aorta

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