Variant report

Variant	rs12498817
Chromosome Location	chr4:147927227-147927228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10519850	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12501143	0.95[ASN][1000 genomes]
rs12501290	0.95[ASN][1000 genomes]
rs12502103	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12508180	0.95[ASN][1000 genomes]
rs12508751	0.95[ASN][1000 genomes]
rs12511968	0.87[MEX][hapmap]
rs12512976	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1370303	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17022270	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17656888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17656944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17656983	0.95[ASN][1000 genomes]
rs17657124	0.95[ASN][1000 genomes]
rs58289064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832643	0.87[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461676	chr4:147927227-147962432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595652	chr4:147927227-147962432	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147925800-147932600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:147925800-147932600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:147925800-147936600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:147926000-147927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:147926000-147932200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:147926600-147932600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:147926800-147932000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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