Variant report
| Variant | rs12501143 |
|---|---|
| Chromosome Location | chr4:147967170-147967171 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10519821 | 0.89[EUR][1000 genomes] |
| rs10519850 | 0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12498817 | 0.95[ASN][1000 genomes] |
| rs12500369 | 0.89[EUR][1000 genomes] |
| rs12501290 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12501579 | 0.89[EUR][1000 genomes] |
| rs12502103 | 0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12508180 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12508751 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12512976 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1370303 | 0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17022031 | 0.89[EUR][1000 genomes] |
| rs17022270 | 0.95[ASN][1000 genomes] |
| rs17609942 | 0.89[EUR][1000 genomes] |
| rs17609956 | 0.89[EUR][1000 genomes] |
| rs17656106 | 0.89[EUR][1000 genomes] |
| rs17656888 | 0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17656944 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17656983 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17657124 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4835054 | 0.89[EUR][1000 genomes] |
| rs4835350 | 0.89[EUR][1000 genomes] |
| rs4835351 | 0.89[EUR][1000 genomes] |
| rs4835353 | 0.89[EUR][1000 genomes] |
| rs57587608 | 0.93[EUR][1000 genomes] |
| rs58289064 | 0.95[ASN][1000 genomes] |
| rs6814899 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv880240 | chr4:147905897-148032003 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016598 | chr4:147931134-148012064 | Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:147965800-147970400 | Weak transcription | Stomach Smooth Muscle | stomach |
| 2 | chr4:147966800-147967800 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
