Variant report

Variant	rs12501848
Chromosome Location	chr4:20577615-20577616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20572629..20574643-chr4:20577158..20579166,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4697166	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
2	chr4:20533000-20578000	Weak transcription	NHLF	lung
3	chr4:20535800-20593600	Weak transcription	Fetal Kidney	kidney
4	chr4:20536800-20618600	Weak transcription	Spleen	Spleen
5	chr4:20555200-20585600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:20555600-20599200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:20556000-20591000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:20560000-20583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:20567000-20581800	Weak transcription	NHEK	skin
10	chr4:20567000-20604000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:20567200-20605200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:20567200-20617000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:20570000-20578600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:20571200-20593800	Weak transcription	Osteobl	bone
15	chr4:20572800-20582200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:20574800-20592200	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:20575200-20590800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:20576000-20578400	Enhancers	Fetal Brain Female	brain
19	chr4:20576200-20578200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:20576200-20579800	Enhancers	Fetal Lung	lung
21	chr4:20576400-20577800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:20576400-20578400	Enhancers	Fetal Brain Male	brain
23	chr4:20576600-20578000	Strong transcription	NHDF-Ad	bronchial
24	chr4:20577400-20578800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:20577400-20582200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:20577400-20597200	Weak transcription	Fetal Stomach	stomach
27	chr4:20577600-20577800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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