Variant report

Variant	rs12502214
Chromosome Location	chr4:68995856-68995857
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr4:68995434-68996067	K562	blood:	n/a	n/a
2	STAT5A	chr4:68995321-68995939	K562	blood:	n/a	n/a
3	HDAC2	chr4:68995361-68995923	MCF-7	breast:	n/a	chr4:68995882-68995896 chr4:68995881-68995895
4	EP300	chr4:68995404-68995875	MCF-7	breast:	n/a	n/a
5	NR2F2	chr4:68995334-68995966	MCF-7	breast:	n/a	n/a
6	BHLHE40	chr4:68995560-68995938	K562	blood:	n/a	n/a
7	GATA3	chr4:68995114-68996131	MCF-7	breast:	n/a	chr4:68995841-68995857 chr4:68995835-68995852 chr4:68995686-68995702
8	TEAD4	chr4:68995274-68996055	K562	blood:	n/a	n/a
9	ARID3A	chr4:68995505-68995878	K562	blood:	n/a	n/a
10	CEBPB	chr4:68995579-68995924	K562	blood:	n/a	n/a
11	NR2F2	chr4:68995367-68995986	MCF-7	breast:	n/a	n/a
12	CCNT2	chr4:68995497-68995943	K562	blood:	n/a	n/a
13	HDAC2	chr4:68995489-68995869	MCF-7	breast:	n/a	n/a
14	CBX3	chr4:68995373-68995867	HCT-116	colon:	n/a	n/a
15	CEBPB	chr4:68995621-68995932	K562	blood:	n/a	n/a
16	RCOR1	chr4:68995354-68995947	K562	blood:	n/a	n/a
17	TBL1XR1	chr4:68995478-68995961	K562	blood:	n/a	n/a
18	GATA1	chr4:68995234-68996210	PBDE	blood:	n/a	chr4:68995841-68995857 chr4:68995835-68995852 chr4:68995686-68995702
19	EP300	chr4:68995406-68995999	K562	blood:	n/a	chr4:68995882-68995896
20	GATA3	chr4:68995393-68996081	MCF-7	breast:	n/a	chr4:68995841-68995857 chr4:68995835-68995852 chr4:68995686-68995702
21	TAL1	chr4:68995316-68996003	K562	blood:	n/a	chr4:68995835-68995853 chr4:68995568-68995583 chr4:68995445-68995460
22	FOSL1	chr4:68995666-68995885	K562	blood:	n/a	n/a
23	CEBPB	chr4:68995482-68995898	MCF-7	breast:	n/a	n/a
24	POLR2A	chr4:68995677-68995871	K562	blood:	n/a	n/a
25	JUND	chr4:68995474-68996003	K562	blood:	n/a	n/a
26	TCF12	chr4:68995376-68995859	MCF-7	breast:	n/a	n/a
27	SP1	chr4:68995385-68995907	HCT-116	colon:	n/a	n/a
28	EP300	chr4:68995406-68995933	MCF-7	breast:	n/a	chr4:68995882-68995896
29	ATF3	chr4:68995610-68995980	K562	blood:	n/a	n/a
30	CBX3	chr4:68995389-68995866	K562	blood:	n/a	n/a
31	SIN3AK20	chr4:68995296-68995989	MCF-7	breast:	n/a	n/a
32	JUND	chr4:68995449-68995895	HCT-116	colon:	n/a	n/a
33	GATA2	chr4:68995389-68996024	K562	blood:	n/a	chr4:68995841-68995857 chr4:68995835-68995852 chr4:68995686-68995702
34	NR2F2	chr4:68995350-68995983	K562	blood:	n/a	n/a
35	SIN3AK20	chr4:68995346-68996033	MCF-7	breast:	n/a	n/a
36	TEAD4	chr4:68995327-68996001	K562	blood:	n/a	n/a
37	ZMIZ1	chr4:68995436-68995879	K562	blood:	n/a	n/a
38	MAX	chr4:68995422-68995869	MCF-7	breast:	n/a	n/a
39	ZNF217	chr4:68995396-68995917	MCF-7	breast:	n/a	n/a
40	ZNF384	chr4:68995632-68996133	K562	blood:	n/a	n/a
41	FOSL2	chr4:68995394-68995954	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
TMPRSS11F	TF binding region

Extended variants
information (count: 149 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10004522	0.89[EUR][1000 genomes]
rs10018943	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10021559	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1079449	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1109360	0.80[EUR][1000 genomes]
rs11131733	0.81[EUR][1000 genomes]
rs11131735	0.87[EUR][1000 genomes]
rs11131739	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11727567	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11731769	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11733984	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11940802	0.87[EUR][1000 genomes]
rs11947862	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11947869	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12501405	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12501540	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12502757	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12502946	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12503814	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12504120	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12504557	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12506837	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12507309	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12507767	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12645384	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12648112	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12651598	0.87[EUR][1000 genomes]
rs13131396	0.80[EUR][1000 genomes]
rs13132100	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13132990	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13135438	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13147736	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13148584	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1320264	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13435884	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1370830	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1438389	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1438398	0.80[EUR][1000 genomes]
rs1438439	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1438440	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1438441	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1438442	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1438443	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1438444	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1438445	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1438447	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1530062	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1530063	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17089005	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1837215	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1837216	0.80[EUR][1000 genomes]
rs1866327	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1866328	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1866329	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1898644	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2028249	0.81[EUR][1000 genomes]
rs2118625	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2164935	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2319718	0.80[EUR][1000 genomes]
rs2319793	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2319798	0.83[ASN][1000 genomes]
rs28535832	0.81[EUR][1000 genomes]
rs34237875	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3819257	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4317250	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4407557	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4538543	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4613616	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4640716	0.81[EUR][1000 genomes]
rs4860276	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4860277	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4860278	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4860282	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4860875	0.81[EUR][1000 genomes]
rs4860897	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4860908	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59649794	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6552145	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66943336	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6812743	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6819568	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6827417	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6842578	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71604558	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7435855	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7664796	0.81[EUR][1000 genomes]
rs7665583	0.81[EUR][1000 genomes]
rs7674140	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7688501	0.81[EUR][1000 genomes]
rs7688721	0.81[EUR][1000 genomes]
rs939206	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:58 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007376	chr4:68693483-69008202	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv879219	chr4:68743032-69028913	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv1812791	chr4:68763239-69017739	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv1810203	chr4:68763794-68998153	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv1812515	chr4:68763794-68998153	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv2757939	chr4:68777006-69013364	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	esv2759257	chr4:68777006-69028913	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	esv1806791	chr4:68781695-69018980	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	esv1808905	chr4:68782651-69020080	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	esv1809262	chr4:68785411-69007019	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	esv1808371	chr4:68786211-69015416	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	esv1805212	chr4:68786223-69015428	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	esv1809085	chr4:68788421-69016619	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
14	esv10683	chr4:68788730-69016101	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
15	nsv10514	chr4:68789515-69015886	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
16	esv1805680	chr4:68789778-69001532	Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	esv1812567	chr4:68789778-69001532	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	esv1805142	chr4:68789778-69017739	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
19	esv1812954	chr4:68789778-69017739	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
20	esv1814820	chr4:68789778-69033099	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
21	esv1805370	chr4:68789778-69043722	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
22	esv1806811	chr4:68790607-69015416	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
23	esv1807563	chr4:68790607-69015416	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
24	esv1806399	chr4:68790619-69009703	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
25	esv1805874	chr4:68790619-69015428	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
26	esv35010	chr4:68790834-69018168	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
27	esv2757060	chr4:68790864-69028913	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
28	esv1813796	chr4:68791144-69008251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
29	esv1813857	chr4:68791144-69008251	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
30	esv1809432	chr4:68791333-69015820	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
31	esv1812856	chr4:68791333-69021023	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
32	esv1807026	chr4:68791344-69016756	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
33	esv1804496	chr4:68791400-69013001	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
34	esv1806212	chr4:68791400-69013001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
35	esv1807472	chr4:68791400-69013001	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
36	esv1808201	chr4:68791400-69013001	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
37	esv1808500	chr4:68791400-69013001	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
38	esv1811685	chr4:68791400-69013001	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
39	esv1814909	chr4:68791400-69013001	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
40	esv1807658	chr4:68795290-69013001	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
41	esv1806146	chr4:68797380-69001532	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
42	esv1809989	chr4:68797380-69001532	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
43	esv1813878	chr4:68797380-69013001	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
44	nsv433367	chr4:68797380-69013001	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
45	esv1808788	chr4:68797487-69008251	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
46	nsv1008084	chr4:68797598-69482831	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
47	nsv537131	chr4:68797598-69482831	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
48	esv1807943	chr4:68806909-69013001	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
49	esv1805563	chr4:68808967-69013001	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
50	esv3692823	chr4:68810246-69013001	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12502214	GCOM2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:68995400-68996000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:68995400-68996000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr4:68995400-68996000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:68995400-68996000	Enhancers	HMEC	breast
5	chr4:68995400-68996000	Flanking Active TSS	K562	blood
6	chr4:68995400-68996200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:68995400-68996200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:68995400-68996200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr4:68995400-68996200	Flanking Active TSS	NHEK	skin
10	chr4:68995600-68996200	Enhancers	Placenta	Placenta
11	chr4:68995800-68998000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:68995800-68998200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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