Variant report

Variant	rs12502459
Chromosome Location	chr4:80101785-80101786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10013555	0.88[ASN][1000 genomes]
rs10032360	0.90[ASN][1000 genomes]
rs10032363	0.90[ASN][1000 genomes]
rs1026394	0.96[ASN][1000 genomes]
rs1080690	0.85[ASN][1000 genomes]
rs11098588	0.93[ASN][1000 genomes]
rs11098595	0.95[ASN][1000 genomes]
rs11098603	0.90[ASN][1000 genomes]
rs11732616	0.90[ASN][1000 genomes]
rs11735553	0.95[ASN][1000 genomes]
rs12504676	0.95[ASN][1000 genomes]
rs12643994	0.93[ASN][1000 genomes]
rs12644018	0.90[ASN][1000 genomes]
rs12648205	0.95[ASN][1000 genomes]
rs12650537	0.84[ASN][1000 genomes]
rs13143413	0.88[ASN][1000 genomes]
rs13145326	0.95[ASN][1000 genomes]
rs1385055	0.91[ASN][1000 genomes]
rs1455313	0.93[ASN][1000 genomes]
rs1840480	0.90[ASN][1000 genomes]
rs1955232	0.85[ASN][1000 genomes]
rs28528138	0.83[ASN][1000 genomes]
rs28727508	0.84[AFR][1000 genomes]
rs4246718	0.95[ASN][1000 genomes]
rs4302482	0.95[ASN][1000 genomes]
rs4385093	0.90[ASN][1000 genomes]
rs4386626	0.95[ASN][1000 genomes]
rs4425403	0.95[ASN][1000 genomes]
rs4470657	0.95[ASN][1000 genomes]
rs4502706	0.95[ASN][1000 genomes]
rs4519821	0.95[ASN][1000 genomes]
rs4527507	0.88[ASN][1000 genomes]
rs4535355	0.95[ASN][1000 genomes]
rs4535356	0.86[ASN][1000 genomes]
rs4571359	0.95[ASN][1000 genomes]
rs4571360	0.95[ASN][1000 genomes]
rs4639097	0.80[ASN][1000 genomes]
rs4975079	0.95[ASN][1000 genomes]
rs4975080	0.91[ASN][1000 genomes]
rs4975166	0.88[ASN][1000 genomes]
rs4975171	0.95[ASN][1000 genomes]
rs4975172	0.95[ASN][1000 genomes]
rs4975173	0.90[ASN][1000 genomes]
rs4988619	0.95[ASN][1000 genomes]
rs56008448	0.85[ASN][1000 genomes]
rs58479998	0.88[ASN][1000 genomes]
rs6534217	0.95[ASN][1000 genomes]
rs6534218	0.95[ASN][1000 genomes]
rs6534222	0.85[ASN][1000 genomes]
rs6534253	0.90[ASN][1000 genomes]
rs6810580	0.95[ASN][1000 genomes]
rs6826553	0.85[ASN][1000 genomes]
rs6826564	0.95[ASN][1000 genomes]
rs6827253	0.95[ASN][1000 genomes]
rs6832917	0.90[ASN][1000 genomes]
rs6837864	0.95[ASN][1000 genomes]
rs6853034	0.95[ASN][1000 genomes]
rs6855921	0.95[ASN][1000 genomes]
rs7656444	0.95[ASN][1000 genomes]
rs7659766	0.95[ASN][1000 genomes]
rs7667438	0.90[ASN][1000 genomes]
rs7673022	0.95[ASN][1000 genomes]
rs7676343	0.88[ASN][1000 genomes]
rs7679438	0.95[ASN][1000 genomes]
rs7694880	0.90[ASN][1000 genomes]
rs7695330	0.95[ASN][1000 genomes]
rs9307489	0.95[ASN][1000 genomes]
rs9715410	0.95[ASN][1000 genomes]
rs9993157	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1014428	chr4:80089712-80132813	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80095200-80102800	Weak transcription	GM12878-XiMat	blood
2	chr4:80098200-80105400	Weak transcription	Fetal Stomach	stomach
3	chr4:80098600-80102600	Weak transcription	K562	blood
4	chr4:80101000-80105400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:80101200-80105600	Weak transcription	Fetal Lung	lung
6	chr4:80101200-80106400	Weak transcription	Fetal Kidney	kidney

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