Variant report

Variant	rs12502909
Chromosome Location	chr4:120377529-120377530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr4:120377416-120377779	GM12878	blood:	n/a	n/a
2	HEY1	chr4:120377428-120377786	K562	blood:	n/a	n/a
3	TCF12	chr4:120377465-120377656	GM12878	blood:	n/a	n/a
4	POLR2A	chr4:120377301-120377775	GM12878	blood:	n/a	n/a
5	PAX5	chr4:120377401-120377817	GM12878	blood:	n/a	n/a
6	PAX5	chr4:120377383-120377780	GM12878	blood:	n/a	n/a
7	PAX5	chr4:120377511-120377757	GM12878	blood:	n/a	n/a
8	POLR2A	chr4:120377326-120378803	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr4:120377506-120377772	GM12878	blood:	n/a	n/a
10	POLR2A	chr4:120377467-120377768	H1-hESC	embryonic stem cell:	n/a	n/a
11	PAX5	chr4:120377409-120377908	GM12878	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119679216..119681142-chr4:120375525..120377542,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC110373.1-3	chr4:120377505-120377592	ENSG00000250950.1

No data

Variant related genes	Relation type
ENSG00000245958	TF binding region
ENSG00000150961	Chromatin interaction

Extended variants
information (count: 241 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:229)

rs_ID	r²[population]
rs10004144	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10006525	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10006706	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10006793	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10008459	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10008791	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10009450	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10009626	0.86[ASN][1000 genomes]
rs10013305	0.86[ASN][1000 genomes]
rs10017335	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10017389	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10018280	0.86[ASN][1000 genomes]
rs10018726	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10019406	0.82[AMR][1000 genomes]
rs10019522	0.82[AMR][1000 genomes]
rs10019674	0.85[ASN][1000 genomes]
rs10020027	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10026493	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10026516	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10026736	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10026748	0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10026952	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10030660	0.87[ASN][1000 genomes]
rs10031483	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10031665	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10032151	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10032158	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10034450	0.86[ASN][1000 genomes]
rs10034623	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1010739	0.86[ASN][1000 genomes]
rs1010740	0.86[ASN][1000 genomes]
rs10518328	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11098524	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11098525	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11098526	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11098527	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11098530	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11098531	0.86[ASN][1000 genomes]
rs11098532	0.85[ASN][1000 genomes]
rs1155576	0.86[ASN][1000 genomes]
rs11723090	0.85[ASN][1000 genomes]
rs11729521	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11731756	0.86[ASN][1000 genomes]
rs11734241	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11736416	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11933966	0.86[ASN][1000 genomes]
rs11934314	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11934328	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11934397	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11934940	0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11935596	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11940028	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11941859	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11943877	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11947234	0.86[ASN][1000 genomes]
rs12498539	0.86[ASN][1000 genomes]
rs12498599	0.86[ASN][1000 genomes]
rs12499324	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12502389	0.85[ASN][1000 genomes]
rs12502423	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12505878	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12505953	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12507964	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12508504	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12510138	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13107475	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13128602	0.86[ASN][1000 genomes]
rs13134665	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13145352	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13149407	0.87[ASN][1000 genomes]
rs1383532	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1383533	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1480930	0.82[ASN][1000 genomes]
rs1480931	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1480936	0.86[ASN][1000 genomes]
rs1480939	0.86[ASN][1000 genomes]
rs1480940	0.86[ASN][1000 genomes]
rs1552092	0.85[ASN][1000 genomes]
rs1552095	0.87[ASN][1000 genomes]
rs17005535	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17006190	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17008998	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17009122	0.81[ASN][1000 genomes]
rs17046116	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17046118	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17050695	0.85[ASN][1000 genomes]
rs1809406	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2127821	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2127823	0.85[ASN][1000 genomes]
rs2170276	0.85[ASN][1000 genomes]
rs2291185	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2306455	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2306456	0.86[ASN][1000 genomes]
rs2306457	0.86[ASN][1000 genomes]
rs2389803	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2389809	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28374462	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28394590	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28408407	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28441656	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28444327	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28450134	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28461559	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28479042	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28495013	0.83[AMR][1000 genomes]
rs28499576	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28529639	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28559989	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28567426	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28571712	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28587142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28587175	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28626372	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28632018	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28655325	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28665282	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28685688	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28712309	0.83[AMR][1000 genomes]
rs28714318	0.83[AMR][1000 genomes]
rs28718422	0.86[ASN][1000 genomes]
rs28735358	0.86[ASN][1000 genomes]
rs28753180	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28845498	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2892848	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34004415	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34308924	0.86[ASN][1000 genomes]
rs34378623	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34566984	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34792640	0.80[AMR][1000 genomes]
rs34858317	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34868248	0.86[ASN][1000 genomes]
rs34954036	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35063680	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35111011	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35111518	0.84[ASN][1000 genomes]
rs35494005	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36040693	0.86[ASN][1000 genomes]
rs3733519	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3733520	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3733523	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3733524	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3733525	0.87[ASN][1000 genomes]
rs3736115	0.85[ASN][1000 genomes]
rs3775841	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3775843	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3775844	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3775845	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3775847	0.87[ASN][1000 genomes]
rs3775848	0.85[ASN][1000 genomes]
rs3775849	0.86[ASN][1000 genomes]
rs3775852	0.86[ASN][1000 genomes]
rs3775854	0.86[ASN][1000 genomes]
rs3775858	0.85[ASN][1000 genomes]
rs3822190	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3822191	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3822192	0.86[ASN][1000 genomes]
rs3822194	0.86[ASN][1000 genomes]
rs3822195	0.86[ASN][1000 genomes]
rs4001185	0.83[AMR][1000 genomes]
rs4001190	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4001191	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4577559	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55825515	0.85[ASN][1000 genomes]
rs56270433	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56372521	0.86[AMR][1000 genomes]
rs58452170	0.86[ASN][1000 genomes]
rs59182778	0.82[AMR][1000 genomes]
rs59732491	0.85[ASN][1000 genomes]
rs6534139	0.87[ASN][1000 genomes]
rs6534140	0.85[ASN][1000 genomes]
rs6534141	0.85[ASN][1000 genomes]
rs66506550	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67265404	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6822679	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6834796	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6835635	0.86[ASN][1000 genomes]
rs6837828	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6838814	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6842762	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6847818	0.86[ASN][1000 genomes]
rs6848389	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6849171	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6849561	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6853998	0.86[ASN][1000 genomes]
rs6858592	0.86[ASN][1000 genomes]
rs6858777	0.86[ASN][1000 genomes]
rs71614422	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71614438	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71614443	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71614444	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71614448	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71614449	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71629403	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71629404	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73842633	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7436506	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7654529	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7654546	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7654587	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7656252	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7659336	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7659501	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7659551	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7664458	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7664986	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7678400	0.86[ASN][1000 genomes]
rs7680063	0.81[ASN][1000 genomes]
rs7680704	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7681214	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7681544	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7681978	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7687843	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7688613	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7688802	0.86[ASN][1000 genomes]
rs7695620	0.86[ASN][1000 genomes]
rs7699064	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9683709	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9684475	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9685777	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9685784	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9759478	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9760442	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9884402	0.85[ASN][1000 genomes]
rs9993199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9994730	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9994810	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9995026	0.85[ASN][1000 genomes]
rs9997631	0.86[ASN][1000 genomes]
rs9998585	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv879841	chr4:120244085-120388406	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv879842	chr4:120244085-120424087	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv427694	chr4:120250511-120501728	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv2538163	chr4:120252854-120388678	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv879843	chr4:120326323-120502461	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv879844	chr4:120341296-120449810	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv879846	chr4:120341296-120491714	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv879845	chr4:120341296-120502461	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv879847	chr4:120371729-120450159	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs12502909	FLJ14186///LOC284701///LOC441124///LOC728624	Cis_1M	lymphoblastoid	RTeQTL
rs12502909	RP11-33B1.1	cis	lung	GTEx
rs12502909	RP11-33B1.1	cis	Thyroid	GTEx
rs12502909	RP11-33B1.4	cis	Whole Blood	GTEx
rs12502909	LOC645513	Cis_1M	lymphoblastoid	RTeQTL
rs12502909	RP11-33B1.1	cis	Whole Blood	GTEx
rs12502909	RP11-33B1.1	cis	Heart Left Ventricle	GTEx
rs12502909	RP11-384K6.6	cis	Whole Blood	GTEx
rs12502909	RP11-33B1.1	cis	Esophagus Mucosa	GTEx
rs12502909	RP11-33B1.1	cis	Nerve Tibial	GTEx

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120375200-120377600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:120375200-120377600	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr4:120375200-120377600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:120375200-120377600	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr4:120375200-120377600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:120375200-120377600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:120375200-120377600	Active TSS	Primary hematopoietic stem cells	blood
8	chr4:120375200-120377600	Active TSS	Muscle Satellite Cultured Cells	--
9	chr4:120375200-120377600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:120375200-120377600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:120375200-120377600	Active TSS	HMEC	breast
12	chr4:120375200-120377600	Active TSS	HSMMtube	muscle
13	chr4:120375200-120377600	Active TSS	NHDF-Ad	bronchial
14	chr4:120375200-120377600	Active TSS	NHEK	skin
15	chr4:120375200-120377800	Active TSS	HepG2	liver
16	chr4:120376200-120383800	Weak transcription	Fetal Brain Male	brain
17	chr4:120376400-120392400	Weak transcription	Fetal Lung	lung
18	chr4:120376400-120471600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr4:120376600-120397200	Weak transcription	Aorta	Aorta
20	chr4:120376600-120399000	Weak transcription	Stomach Mucosa	stomach
21	chr4:120376600-120401200	Weak transcription	Psoas Muscle	Psoas
22	chr4:120376600-120419200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:120376800-120377600	Enhancers	Primary B cells from peripheral blood	blood
24	chr4:120376800-120377800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:120377000-120377600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr4:120377000-120377600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:120377000-120377600	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr4:120377000-120377600	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr4:120377000-120377600	Flanking Active TSS	Placenta	Placenta
30	chr4:120377000-120377800	Flanking Active TSS	Dnd41	blood
31	chr4:120377000-120388600	Weak transcription	Primary T cells from cord blood	blood
32	chr4:120377000-120416000	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:120377200-120377600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:120377200-120377600	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr4:120377200-120377600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr4:120377200-120377600	Enhancers	Brain Angular Gyrus	brain
37	chr4:120377200-120378000	Enhancers	Primary T cells fromperipheralblood	blood
38	chr4:120377200-120388800	Weak transcription	Brain Hippocampus Middle	brain
39	chr4:120377200-120392400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr4:120377200-120393200	Weak transcription	Primary B cells from cord blood	blood
41	chr4:120377200-120397400	Weak transcription	Lung	lung
42	chr4:120377200-120400000	Weak transcription	Esophagus	oesophagus
43	chr4:120377200-120400600	Weak transcription	A549	lung
44	chr4:120377200-120401000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr4:120377200-120403400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr4:120377200-120415600	Weak transcription	Brain Substantia Nigra	brain
47	chr4:120377200-120416200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr4:120377200-120419600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr4:120377200-120433800	Weak transcription	Gastric	stomach
50	chr4:120377400-120377600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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