Variant report

Variant	rs12510415
Chromosome Location	chr4:81548353-81548354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10033787	0.80[EUR][1000 genomes]
rs10034974	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1026995	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1038532	0.97[ASN][1000 genomes]
rs10857174	0.86[ASN][1000 genomes]
rs11099253	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11731831	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11937407	0.80[EUR][1000 genomes]
rs11940032	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11944437	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11944925	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12650570	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13111449	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13136169	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13141564	0.98[ASN][1000 genomes]
rs13152520	0.98[ASN][1000 genomes]
rs1352076	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1385890	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486022	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1495489	0.81[ASN][1000 genomes]
rs1495493	0.81[ASN][1000 genomes]
rs1843563	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1872576	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1874336	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1905967	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1908550	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1971301	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2132267	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2132268	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2132269	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2132271	0.81[ASN][1000 genomes]
rs28493682	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2867781	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2903671	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs329401	0.81[EUR][1000 genomes]
rs34269363	0.80[EUR][1000 genomes]
rs4693494	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4693495	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4693537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5019005	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6535016	0.85[ASN][1000 genomes]
rs6823400	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6831485	0.81[EUR][1000 genomes]
rs7658613	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7660815	0.80[EUR][1000 genomes]
rs7666589	0.85[ASN][1000 genomes]
rs7674255	0.93[ASN][1000 genomes]
rs7685226	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7686715	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7693460	0.96[ASN][1000 genomes]
rs7695414	0.85[ASN][1000 genomes]
rs9307720	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs967941	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9993620	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv964276	chr4:81543380-81555021	Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81545200-81556600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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