Variant report

Variant	rs12510679
Chromosome Location	chr4:103350585-103350586
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103349348..103351015-chr4:103352564..103354082,2	K562	blood:
2	chr4:103265940..103267977-chr4:103349282..103352419,3	MCF-7	breast:
3	chr4:103345514..103347630-chr4:103348546..103350649,2	K562	blood:
4	chr4:103263099..103266958-chr4:103348980..103352984,5	K562	blood:
5	chr4:103349492..103352803-chr4:103420968..103424398,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109320	Chromatin interaction
ENSG00000260651	Chromatin interaction
ENSG00000138821	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11097781	0.93[ASN][1000 genomes]
rs11097782	0.93[ASN][1000 genomes]
rs11097783	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12513230	0.93[ASN][1000 genomes]
rs12513242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12513366	0.93[ASN][1000 genomes]
rs13113284	0.93[ASN][1000 genomes]
rs13115343	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13119968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13122985	0.93[ASN][1000 genomes]
rs13132193	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137839	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13150351	0.93[ASN][1000 genomes]
rs17825737	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17825838	1.00[CHB][hapmap]
rs2169595	0.93[ASN][1000 genomes]
rs2169596	0.93[ASN][1000 genomes]
rs4699025	0.93[ASN][1000 genomes]
rs4699028	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6817730	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6846971	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs926163	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103342400-103350800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:103348200-103350600	Enhancers	Hela-S3	cervix
3	chr4:103348200-103351800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:103348800-103351600	Enhancers	Liver	Liver
5	chr4:103349200-103351600	Weak transcription	HepG2	liver
6	chr4:103349400-103351600	Weak transcription	Brain Anterior Caudate	brain
7	chr4:103349600-103351600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:103349800-103350600	Enhancers	NHEK	skin
9	chr4:103350000-103351000	Enhancers	HMEC	breast
10	chr4:103350200-103350800	Flanking Active TSS	A549	lung
11	chr4:103350200-103351400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:103350400-103350600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:103350400-103350600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr4:103350400-103350800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:103350400-103351000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:103350400-103351000	Enhancers	NH-A	brain
17	chr4:103350400-103351000	Enhancers	NHLF	lung
18	chr4:103350400-103351200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:103350400-103351200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr4:103350400-103351400	Enhancers	Dnd41	blood
21	chr4:103350400-103351400	Enhancers	NHDF-Ad	bronchial
22	chr4:103350400-103351600	Enhancers	HUES6 Cell Line	embryonic stem cell

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