Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10002814	0.92[ASN][1000 genomes]
rs11098951	0.81[EUR][1000 genomes]
rs11733374	0.85[ASN][1000 genomes]
rs12510308	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13103695	0.85[ASN][1000 genomes]
rs1403125	0.85[ASN][1000 genomes]
rs1522432	0.85[ASN][1000 genomes]
rs1851400	0.81[ASN][1000 genomes]
rs1948506	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2140107	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34174952	0.85[ASN][1000 genomes]
rs35053204	0.84[AFR][1000 genomes]
rs4624668	0.85[ASN][1000 genomes]
rs4975220	0.85[ASN][1000 genomes]
rs4975299	0.88[EUR][1000 genomes]
rs4975300	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6534674	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534675	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7679633	0.85[ASN][1000 genomes]
rs7688852	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7691103	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129149800-129152000	Weak transcription	NHEK	skin
2	chr4:129149800-129161800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:129150400-129154000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:129150600-129152000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:129151000-129155800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:129151000-129161600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:129151600-129152000	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search: