Variant report

Variant	rs12518567
Chromosome Location	chr5:98099065-98099066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98097815..98101035-chr5:98108800..98111033,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174136	Chromatin interaction
ENSG00000246763	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10463991	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10463992	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10900866	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11242488	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513899	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12515608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12521450	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17166353	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2080892	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271218	0.89[CEU][hapmap];0.84[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2302981	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3952931	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4018049	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59968659	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67111144	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67755922	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68077609	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6888898	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72773643	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72773645	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72773646	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72773650	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72773652	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72773654	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72773674	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72773675	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72773678	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7727348	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98089600-98104000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:98097400-98103200	Weak transcription	HSMMtube	muscle
3	chr5:98098200-98101000	Enhancers	NHDF-Ad	bronchial
4	chr5:98098400-98100400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:98098400-98100600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:98098400-98100600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:98098400-98100600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:98098600-98099400	Enhancers	Fetal Muscle Leg	muscle
9	chr5:98098800-98099400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:98098800-98099400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:98098800-98099600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:98098800-98100000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:98098800-98100000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:98098800-98100600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:98098800-98100600	Enhancers	NHLF	lung
16	chr5:98099000-98099200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr5:98099000-98099400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:98099000-98099400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:98099000-98099400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:98099000-98099400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:98099000-98099400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:98099000-98099400	Flanking Active TSS	NH-A	brain
23	chr5:98099000-98100000	Enhancers	Osteobl	bone
24	chr5:98099000-98100600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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