Variant report
| Variant | rs12523384 |
|---|---|
| Chromosome Location | chr5:45119581-45119582 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs12055286 | 1.00[ASN][1000 genomes] |
| rs12153053 | 0.82[ASN][1000 genomes] |
| rs12514615 | 0.84[ASN][1000 genomes] |
| rs12516488 | 0.92[ASN][1000 genomes] |
| rs12517546 | 0.84[ASN][1000 genomes] |
| rs12520430 | 0.92[ASN][1000 genomes] |
| rs12521953 | 0.84[ASN][1000 genomes] |
| rs12522524 | 0.84[ASN][1000 genomes] |
| rs12522910 | 0.84[ASN][1000 genomes] |
| rs1472584 | 0.92[ASN][1000 genomes] |
| rs16902068 | 0.84[ASN][1000 genomes] |
| rs4267876 | 1.00[ASN][1000 genomes] |
| rs4357042 | 0.92[ASN][1000 genomes] |
| rs4566805 | 0.92[ASN][1000 genomes] |
| rs56699889 | 0.86[ASN][1000 genomes] |
| rs62367468 | 0.92[ASN][1000 genomes] |
| rs62367469 | 0.92[ASN][1000 genomes] |
| rs62367473 | 0.92[ASN][1000 genomes] |
| rs62367515 | 0.84[ASN][1000 genomes] |
| rs62367516 | 0.84[ASN][1000 genomes] |
| rs62369908 | 0.82[ASN][1000 genomes] |
| rs62369912 | 0.82[ASN][1000 genomes] |
| rs62369916 | 1.00[ASN][1000 genomes] |
| rs62369917 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033740 | chr5:44996257-45378556 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv537743 | chr5:44996257-45378556 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1018651 | chr5:45003750-45437670 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv537744 | chr5:45003750-45437670 | Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv869151 | chr5:45003751-45362364 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv830280 | chr5:45067773-45250757 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:45111600-45119600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
