Variant report
| Variant | rs12523702 |
|---|---|
| Chromosome Location | chr6:64332103-64332104 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000118482 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10943869 | 0.80[CEU][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap] |
| rs1322416 | 0.82[TSI][hapmap] |
| rs17396843 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1744134 | 0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap] |
| rs1744153 | 0.92[CEU][hapmap];1.00[JPT][hapmap] |
| rs2622312 | 0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes] |
| rs3800490 | 0.81[CHD][hapmap] |
| rs4351235 | 0.86[CHD][hapmap] |
| rs756274 | 0.87[LWK][hapmap] |
| rs7753325 | 0.85[EUR][1000 genomes] |
| rs9294269 | 0.87[TSI][hapmap] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs12523702 | LGSN | cis | Whole Blood | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
