Variant report

Variant	rs12523779
Chromosome Location	chr6:74876690-74876691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1038684	0.86[EUR][1000 genomes]
rs10485385	0.86[EUR][1000 genomes]
rs10485386	0.86[EUR][1000 genomes]
rs10485387	0.86[EUR][1000 genomes]
rs10805997	0.86[EUR][1000 genomes]
rs12175094	0.86[EUR][1000 genomes]
rs12524014	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12525068	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12527310	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12528947	0.89[EUR][1000 genomes]
rs1387418	0.86[EUR][1000 genomes]
rs1387419	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1387420	0.86[EUR][1000 genomes]
rs1416395	0.84[EUR][1000 genomes]
rs1416396	0.84[EUR][1000 genomes]
rs1416397	0.83[EUR][1000 genomes]
rs1416398	0.86[EUR][1000 genomes]
rs1489380	0.86[EUR][1000 genomes]
rs1552564	0.86[EUR][1000 genomes]
rs1552565	0.84[EUR][1000 genomes]
rs16884558	0.86[EUR][1000 genomes]
rs16884590	0.86[EUR][1000 genomes]
rs1844317	0.86[EUR][1000 genomes]
rs1953176	0.86[EUR][1000 genomes]
rs2029393	0.86[EUR][1000 genomes]
rs2029394	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2068742	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2200809	0.86[EUR][1000 genomes]
rs34261519	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4120421	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4403235	0.82[EUR][1000 genomes]
rs4706571	0.80[EUR][1000 genomes]
rs4706577	0.86[EUR][1000 genomes]
rs4706578	0.86[EUR][1000 genomes]
rs4708141	0.86[EUR][1000 genomes]
rs4708142	0.86[EUR][1000 genomes]
rs60997457	0.81[EUR][1000 genomes]
rs67514214	0.81[EUR][1000 genomes]
rs72950553	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72953713	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72953738	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72953745	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72954310	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72959610	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72959903	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72964264	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964267	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72967270	0.87[EUR][1000 genomes]
rs73460274	0.81[EUR][1000 genomes]
rs7746000	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7752957	0.86[EUR][1000 genomes]
rs7776197	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293958	0.84[EUR][1000 genomes]
rs9293959	0.86[EUR][1000 genomes]
rs9293960	0.86[EUR][1000 genomes]
rs9293962	0.86[EUR][1000 genomes]
rs9293964	0.86[EUR][1000 genomes]
rs9341460	0.87[EUR][1000 genomes]
rs9341461	0.81[EUR][1000 genomes]
rs9343123	0.86[EUR][1000 genomes]
rs9343127	0.81[EUR][1000 genomes]
rs9343128	0.81[EUR][1000 genomes]
rs9352083	0.86[EUR][1000 genomes]
rs9352084	0.86[EUR][1000 genomes]
rs9352085	0.86[EUR][1000 genomes]
rs9352087	0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs9359076	0.86[EUR][1000 genomes]
rs9360757	0.86[EUR][1000 genomes]
rs9360759	0.86[EUR][1000 genomes]
rs9360761	0.86[EUR][1000 genomes]
rs9360763	0.86[EUR][1000 genomes]
rs9360766	0.82[EUR][1000 genomes]
rs9360769	0.81[EUR][1000 genomes]
rs9360770	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1017333	chr6:74776830-74907758	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538307	chr6:74776830-74907758	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74876200-74877400	Weak transcription	Fetal Intestine Large	intestine
2	chr6:74876400-74877000	Enhancers	Fetal Intestine Small	intestine
3	chr6:74876600-74876800	Enhancers	Stomach Smooth Muscle	stomach
4	chr6:74876600-74877200	Enhancers	Fetal Muscle Leg	muscle
5	chr6:74876600-74877600	Enhancers	Left Ventricle	heart
6	chr6:74876600-74877800	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:74876600-74878000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:74876600-74878600	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links