Variant report

Variant	rs12529036
Chromosome Location	chr6:150622298-150622299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150613086..150616937-chr6:150621463..150623679,3	MCF-7	breast:
2	chr6:150614780..150617065-chr6:150622253..150624530,2	K562	blood:
3	chr6:150620693..150625949-chr6:150627495..150632317,8	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13195599	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4870445	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911003	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921485	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7356994	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9371388	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9371901	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9397262	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9478665	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150619400-150622800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:150619400-150623000	Weak transcription	NH-A	brain
3	chr6:150619400-150623200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:150619600-150622800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:150619600-150622800	Weak transcription	NHEK	skin
6	chr6:150619600-150623000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:150619600-150623000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:150619600-150623200	Weak transcription	K562	blood
9	chr6:150619600-150623200	Weak transcription	Osteobl	bone
10	chr6:150619600-150641200	Weak transcription	Right Atrium	heart
11	chr6:150619800-150623000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:150620000-150622600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:150620200-150622800	Weak transcription	HMEC	breast
14	chr6:150620200-150623000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:150621400-150622800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:150621400-150623200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:150621600-150623000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:150621600-150623200	Weak transcription	Pancreas	Pancrea
19	chr6:150621600-150623400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:150621600-150635400	Weak transcription	Fetal Heart	heart
21	chr6:150622000-150622400	Flanking Active TSS	Fetal Muscle Leg	muscle
22	chr6:150622000-150623000	Active TSS	Fetal Muscle Trunk	muscle
23	chr6:150622000-150624000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:150622000-150624600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:150622200-150622400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:150622200-150622400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:150622200-150624400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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