Variant report

Variant	rs12530511
Chromosome Location	chr7:39367004-39367005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10951600	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10951601	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11761411	0.90[EUR][1000 genomes]
rs11768007	0.90[EUR][1000 genomes]
rs12533451	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12537044	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17619162	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2074937	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4551241	0.91[EUR][1000 genomes]
rs59663839	0.84[EUR][1000 genomes]
rs60803367	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73118050	0.92[EUR][1000 genomes]
rs73121835	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73126485	0.89[EUR][1000 genomes]
rs73126501	0.90[EUR][1000 genomes]
rs73128428	0.89[EUR][1000 genomes]
rs73130437	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73130461	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39366400-39373600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:39366600-39371800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:39366600-39372400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:39366600-39372400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:39366600-39372800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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