Variant report

Variant	rs12533797
Chromosome Location	chr7:102434399-102434400
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12532220	0.87[ASN][1000 genomes]
rs17136113	0.89[AFR][1000 genomes]
rs57135623	0.84[AFR][1000 genomes]
rs57783515	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58367848	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv1828190	chr7:101966669-102439077	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv1025363	chr7:102072448-102471485	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv469620	chr7:102296392-102454063	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv482714	chr7:102296392-102454063	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	esv2761100	chr7:102335787-102481978	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv470382	chr7:102375663-102538515	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv970564	chr7:102397635-102440049	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102390000-102434400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:102390800-102448800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:102391000-102435400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr7:102391600-102448600	Weak transcription	Adipose Nuclei	Adipose
5	chr7:102416400-102467600	Weak transcription	Brain Anterior Caudate	brain
6	chr7:102419600-102454200	Weak transcription	Osteobl	bone
7	chr7:102419600-102456000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:102419800-102454000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:102420400-102448600	Weak transcription	K562	blood
10	chr7:102420600-102435200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:102420800-102449000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:102421600-102449000	Weak transcription	Liver	Liver
13	chr7:102421600-102452000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr7:102421600-102475600	Weak transcription	Fetal Thymus	thymus
15	chr7:102422000-102435200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:102422000-102448800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:102422000-102474800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr7:102422000-102476000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:102427800-102437000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:102432400-102435800	Weak transcription	NH-A	brain
21	chr7:102433200-102437400	Enhancers	HUVEC	blood vessel
22	chr7:102433600-102437000	Weak transcription	Colon Smooth Muscle	Colon

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