Variant report

Variant	rs12534101
Chromosome Location	chr7:126419412-126419413
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126413394..126414983-chr7:126419208..126420946,2	K562	blood:

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1008907	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10234189	0.82[JPT][hapmap]
rs10251431	0.91[CEU][hapmap]
rs10258445	0.91[CEU][hapmap];0.82[JPT][hapmap]
rs10279350	0.81[CHB][hapmap]
rs10487454	0.86[JPT][hapmap]
rs10487455	0.86[JPT][hapmap]
rs10487456	0.86[JPT][hapmap]
rs10808224	0.86[JPT][hapmap]
rs10808227	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10954131	0.86[JPT][hapmap]
rs10954134	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10954135	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10954138	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11971186	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs11978951	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs12532564	0.86[JPT][hapmap]
rs12533174	0.86[JPT][hapmap]
rs12533463	0.86[JPT][hapmap]
rs12533543	0.85[JPT][hapmap]
rs12536122	0.86[JPT][hapmap]
rs12537689	0.86[JPT][hapmap]
rs12538680	0.86[JPT][hapmap]
rs12538710	0.86[JPT][hapmap]
rs12538744	0.90[JPT][hapmap]
rs12538796	0.85[JPT][hapmap]
rs12540159	0.90[JPT][hapmap]
rs12666621	0.84[JPT][hapmap]
rs12706744	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs1361989	0.86[JPT][hapmap]
rs1362001	0.82[CHB][hapmap]
rs1419448	0.91[CEU][hapmap]
rs1419476	0.86[JPT][hapmap]
rs1419479	0.85[JPT][hapmap]
rs1419480	0.85[JPT][hapmap]
rs1419481	0.86[JPT][hapmap]
rs1419484	0.85[JPT][hapmap]
rs1419485	0.90[JPT][hapmap]
rs1419486	0.86[JPT][hapmap]
rs1419487	0.86[JPT][hapmap]
rs1419488	0.86[JPT][hapmap]
rs1419489	0.86[JPT][hapmap]
rs1419493	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1468155	0.90[JPT][hapmap]
rs1468156	0.86[JPT][hapmap]
rs1579215	0.85[JPT][hapmap]
rs17610889	0.86[JPT][hapmap]
rs17612358	0.86[JPT][hapmap]
rs17683777	0.86[JPT][hapmap]
rs17684332	0.86[JPT][hapmap]
rs17690706	0.86[JPT][hapmap]
rs1815971	0.86[JPT][hapmap]
rs1894733	0.86[JPT][hapmap]
rs2027988	0.85[JPT][hapmap]
rs2027989	0.86[JPT][hapmap]
rs2073862	0.86[JPT][hapmap]
rs2106309	0.86[JPT][hapmap]
rs2106310	0.86[JPT][hapmap]
rs2106311	0.85[JPT][hapmap]
rs2106312	0.85[JPT][hapmap]
rs2106313	0.86[JPT][hapmap]
rs2106314	0.86[JPT][hapmap]
rs2157752	0.82[CEU][hapmap]
rs2237747	0.86[JPT][hapmap]
rs2237750	0.86[JPT][hapmap]
rs2237751	0.86[JPT][hapmap]
rs2237752	0.85[JPT][hapmap]
rs2237767	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2237768	0.80[AMR][1000 genomes]
rs2283070	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2283075	0.91[CEU][hapmap];0.82[JPT][hapmap]
rs2299470	0.85[JPT][hapmap]
rs2299475	0.86[JPT][hapmap]
rs2299476	0.85[JPT][hapmap]
rs2299477	0.86[JPT][hapmap]
rs2299478	0.85[JPT][hapmap]
rs2299479	0.86[JPT][hapmap]
rs2299480	0.84[JPT][hapmap]
rs2299484	0.86[JPT][hapmap]
rs2299486	0.90[JPT][hapmap]
rs2299487	0.86[JPT][hapmap]
rs2299488	0.86[JPT][hapmap]
rs2299491	0.85[JPT][hapmap]
rs2299500	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2299513	0.81[CHB][hapmap]
rs2299514	0.81[CHB][hapmap]
rs2299521	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3802001	0.86[JPT][hapmap]
rs3808148	0.91[CEU][hapmap]
rs3808156	0.86[JPT][hapmap]
rs3808157	0.86[JPT][hapmap]
rs3808161	0.86[JPT][hapmap]
rs3824018	0.86[JPT][hapmap]
rs4236623	0.86[JPT][hapmap]
rs4236624	0.85[JPT][hapmap]
rs4380862	0.82[JPT][hapmap]
rs62470209	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6467092	0.85[JPT][hapmap]
rs6963108	0.82[JPT][hapmap]
rs6964806	0.85[JPT][hapmap]
rs6969693	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs6974018	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs6974396	0.84[JPT][hapmap]
rs728600	0.85[JPT][hapmap]
rs728601	0.86[JPT][hapmap]
rs728602	0.86[JPT][hapmap]
rs756900	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7779831	0.81[JPT][hapmap]
rs7780253	0.82[JPT][hapmap]
rs7790017	0.86[JPT][hapmap]
rs7792592	0.85[JPT][hapmap]
rs7792700	0.86[JPT][hapmap]
rs7804521	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs886176	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs9649507	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs975266	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032612	chr7:126417533-126456282	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126418800-126420400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:126419000-126420600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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