Variant report

Variant	rs12537077
Chromosome Location	chr7:101825367-101825368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101824496..101827113-chr7:101828046..101829904,2	K562	blood:
2	chr7:101823232..101826173-chr7:101845708..101847636,2	K562	blood:
3	chr7:101825238..101827586-chr7:101828070..101830866,3	MCF-7	breast:
4	chr7:101789301..101790857-chr7:101825048..101826732,2	K562	blood:
5	chr7:101584190..101586306-chr7:101823871..101825627,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256295	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10270614	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10808119	0.89[ASN][1000 genomes]
rs1108056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1124297	0.87[ASN][1000 genomes]
rs11540899	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28485359	0.89[ASN][1000 genomes]
rs372968	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs375233	0.87[ASN][1000 genomes]
rs375445	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs376244	0.89[ASN][1000 genomes]
rs382947	0.87[EUR][1000 genomes]
rs385417	0.87[EUR][1000 genomes]
rs408425	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs409224	0.87[EUR][1000 genomes]
rs41275218	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs420920	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs424549	0.87[ASN][1000 genomes]
rs434624	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs437060	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs439268	0.82[ASN][1000 genomes]
rs448775	0.87[EUR][1000 genomes]
rs451352	0.87[ASN][1000 genomes]
rs56077916	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56235745	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60987662	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67531258	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6970036	0.84[ASN][1000 genomes]
rs6976947	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7801220	0.86[CEU][hapmap]
rs7801259	0.88[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12537077	CUX1	cis	parietal	SCAN
rs12537077	EPHB4	cis	parietal	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101797200-101827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:101797200-101832000	Weak transcription	Fetal Heart	heart
3	chr7:101797800-101852200	Weak transcription	NHEK	skin
4	chr7:101800400-101850000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:101800600-101851800	Strong transcription	Fetal Intestine Small	intestine
6	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:101805400-101862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr7:101808200-101840200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:101808400-101868400	Strong transcription	Thymus	Thymus
10	chr7:101812400-101860800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:101812600-101863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:101812600-101867000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr7:101812600-101867000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr7:101813200-101852000	Weak transcription	NHDF-Ad	bronchial
15	chr7:101813400-101832000	Strong transcription	Fetal Stomach	stomach
16	chr7:101813600-101832200	Weak transcription	NHLF	lung
17	chr7:101813800-101860800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:101814000-101829000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:101814000-101837000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:101814000-101863600	Weak transcription	HUVEC	blood vessel
21	chr7:101814200-101830000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:101814200-101858600	Weak transcription	Right Atrium	heart
23	chr7:101814400-101840200	Weak transcription	NH-A	brain
24	chr7:101814600-101828000	Weak transcription	Osteobl	bone
25	chr7:101814600-101829000	Weak transcription	HSMMtube	muscle
26	chr7:101814600-101837200	Weak transcription	HSMM	muscle
27	chr7:101814600-101840200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr7:101816000-101832800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr7:101816000-101859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr7:101816800-101829600	Strong transcription	Gastric	stomach
31	chr7:101817000-101835400	Weak transcription	K562	blood
32	chr7:101817200-101828800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr7:101817200-101851200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:101817400-101829000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr7:101819400-101825800	Weak transcription	Psoas Muscle	Psoas
36	chr7:101819600-101832800	Weak transcription	Fetal Brain Male	brain
37	chr7:101819600-101837400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:101819800-101829200	Weak transcription	Brain Angular Gyrus	brain
39	chr7:101819800-101832800	Weak transcription	Brain Substantia Nigra	brain
40	chr7:101820000-101829800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr7:101820600-101829800	Strong transcription	Primary T cells from cord blood	blood
42	chr7:101820600-101830800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:101820600-101838600	Strong transcription	Fetal Intestine Large	intestine
44	chr7:101820600-101860200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:101820800-101825600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr7:101820800-101829800	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr7:101820800-101830600	Strong transcription	Lung	lung
48	chr7:101821000-101825800	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr7:101821000-101828800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr7:101821000-101830000	Strong transcription	Placenta	Placenta

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