Variant report

Variant	rs12539836
Chromosome Location	chr7:137945028-137945029
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11766493	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11766523	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11769289	0.82[AMR][1000 genomes]
rs11771179	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11773344	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11773406	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12534644	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12534646	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12537308	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12537367	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34840341	0.85[AMR][1000 genomes]
rs35657689	0.84[AMR][1000 genomes]
rs4732302	0.83[AMR][1000 genomes]
rs58182087	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62488563	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7809868	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv527643	chr7:137929307-137954419	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137941600-137952200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:137942400-137953200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:137942600-137946200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:137943200-137946600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:137944400-137945200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr7:137944400-137947200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:137944400-137947200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:137944600-137945400	Weak transcription	K562	blood
9	chr7:137944600-137945600	Weak transcription	HepG2	liver
10	chr7:137944800-137945200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:137945000-137945400	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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