Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12532879	0.90[EUR][1000 genomes]
rs12536467	0.88[YRI][hapmap]
rs12539201	0.88[YRI][hapmap]
rs12540934	0.83[CHB][hapmap]
rs13223313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs13225365	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap]
rs13233606	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13238480	0.92[CHB][hapmap];0.95[ASN][1000 genomes]
rs13243566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247212	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1404732	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17825182	0.85[CHB][hapmap]
rs34103397	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62474778	0.80[EUR][1000 genomes]
rs62481195	0.83[ASN][1000 genomes]
rs62481196	0.83[ASN][1000 genomes]
rs62482322	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464841	1.00[CEU][hapmap]
rs6464842	0.86[ASN][1000 genomes]
rs7781495	0.95[ASN][1000 genomes]
rs7785374	1.00[CEU][hapmap]
rs7785839	1.00[CEU][hapmap]
rs7788047	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv465193	chr7:147512619-147583680	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv608965	chr7:147512619-147583680	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: