Variant report

Variant	rs12540934
Chromosome Location	chr7:147553968-147553969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11980029	0.83[CHB][hapmap]
rs12532879	0.84[EUR][1000 genomes]
rs12536467	0.83[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs12536492	0.88[ASN][1000 genomes]
rs12539201	0.83[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs12540860	0.83[CHB][hapmap]
rs13223313	0.83[CHB][hapmap]
rs13224812	0.88[ASN][1000 genomes]
rs13225365	0.83[CHB][hapmap]
rs13225375	0.88[ASN][1000 genomes]
rs13233606	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13239204	0.88[ASN][1000 genomes]
rs13243566	0.83[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13247212	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1404732	0.85[EUR][1000 genomes]
rs17825182	0.81[JPT][hapmap]
rs2011815	0.82[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2215798	0.83[CHB][hapmap]
rs2710101	0.83[CHB][hapmap]
rs34103397	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34652342	0.90[ASN][1000 genomes]
rs62474778	0.81[EUR][1000 genomes]
rs62482322	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6464842	0.91[CHB][hapmap]
rs6973298	0.89[ASN][1000 genomes]
rs7785374	0.81[CHB][hapmap]
rs7785839	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv465193	chr7:147512619-147583680	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv608965	chr7:147512619-147583680	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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