Variant report

Variant	rs12541569
Chromosome Location	chr8:110565176-110565177
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:110558096..110562827-chr8:110563736..110568570,7	K562	blood:
2	chr8:110429847..110432433-chr8:110563129..110565263,2	K562	blood:
3	chr8:110550646..110556695-chr8:110561304..110567831,11	K562	blood:
4	chr8:110564777..110566734-chr8:110651673..110653484,2	MCF-7	breast:
5	chr8:110563214..110565678-chr8:110658219..110659984,2	K562	blood:
6	chr8:110550694..110556278-chr8:110557032..110565525,15	MCF-7	breast:
7	chr8:110359113..110360008-chr8:110565132..110565748,2	MCF-7	breast:
8	chr8:110564903..110567137-chr8:110578081..110579864,2	MCF-7	breast:
9	chr8:110551988..110555719-chr8:110561035..110566674,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12543415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548910	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375750	1.00[CHB][hapmap]
rs17450206	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17450520	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61734661	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469258	0.91[YRI][hapmap]
rs6469259	1.00[YRI][hapmap]
rs6469264	1.00[CHB][hapmap]
rs6982592	1.00[CHB][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6988341	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995033	1.00[CHB][hapmap]
rs6996280	0.89[YRI][hapmap]
rs6998812	0.91[YRI][hapmap]
rs7000579	0.90[YRI][hapmap]
rs7008100	1.00[YRI][hapmap]
rs72669109	0.81[AFR][1000 genomes]
rs72669122	0.87[AFR][1000 genomes]
rs72669131	0.87[AFR][1000 genomes]
rs7813648	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824177	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7828075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834361	0.90[YRI][hapmap]
rs7839394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842842	1.00[CHB][hapmap]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553000-110565600	Weak transcription	Placenta	Placenta
2	chr8:110553000-110569800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:110553000-110569800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:110553000-110570000	Weak transcription	Lung	lung
5	chr8:110553000-110571800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:110553000-110587000	Weak transcription	Esophagus	oesophagus
7	chr8:110553400-110566600	Weak transcription	Fetal Intestine Large	intestine
8	chr8:110553400-110569800	Weak transcription	Osteobl	bone
9	chr8:110553800-110566800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:110553800-110566800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:110553800-110569600	Weak transcription	Fetal Kidney	kidney
12	chr8:110553800-110569800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:110553800-110613000	Weak transcription	NHLF	lung
14	chr8:110554000-110565400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:110554000-110565400	Weak transcription	HSMM	muscle
16	chr8:110554000-110565600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:110554000-110565800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:110554000-110566600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:110554000-110567000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr8:110554000-110567000	Weak transcription	NH-A	brain
21	chr8:110554000-110567800	Weak transcription	Fetal Thymus	thymus
22	chr8:110554000-110569400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:110554000-110569600	Weak transcription	Fetal Brain Female	brain
24	chr8:110554000-110569800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:110554000-110569800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr8:110554000-110569800	Weak transcription	Fetal Brain Male	brain
27	chr8:110554000-110569800	Weak transcription	Left Ventricle	heart
28	chr8:110554000-110569800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr8:110554000-110569800	Weak transcription	Small Intestine	intestine
30	chr8:110554000-110569800	Weak transcription	Thymus	Thymus
31	chr8:110554000-110570000	Weak transcription	Fetal Stomach	stomach
32	chr8:110554000-110570000	Weak transcription	Right Ventricle	heart
33	chr8:110554000-110571400	Weak transcription	Fetal Intestine Small	intestine
34	chr8:110554000-110571400	Weak transcription	Pancreas	Pancrea
35	chr8:110554000-110583000	Weak transcription	HMEC	breast
36	chr8:110554000-110589200	Weak transcription	Psoas Muscle	Psoas
37	chr8:110554200-110565800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr8:110554200-110566600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr8:110554200-110567200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr8:110554200-110569800	Weak transcription	Fetal Muscle Leg	muscle
41	chr8:110554200-110569800	Weak transcription	HSMMtube	muscle
42	chr8:110554200-110576000	Weak transcription	Brain Substantia Nigra	brain
43	chr8:110554400-110565200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr8:110554400-110565200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr8:110554400-110565400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr8:110554400-110566400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr8:110554400-110566800	Weak transcription	Brain Anterior Caudate	brain
48	chr8:110554600-110565400	Weak transcription	Colon Smooth Muscle	Colon
49	chr8:110554600-110566800	Weak transcription	A549	lung
50	chr8:110554600-110569200	Weak transcription	Fetal Heart	heart

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