The 2.0 version of rSNPBase

Variant report

Variant rs12542649
Chromosome Location chr1:114180966-114180967
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114159000-114195000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
2 chr1:114159200-114194800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:114161600-114184600 Weak transcription Colon Smooth Muscle Colon
4 chr1:114161600-114184600 Weak transcription HepG2 liver
5 chr1:114161800-114199800 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr1:114162200-114184600 Weak transcription Left Ventricle heart
7 chr1:114169200-114189400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr1:114169400-114184600 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr1:114170800-114184600 Weak transcription Stomach Smooth Muscle stomach
10 chr1:114171600-114241400 Weak transcription Right Ventricle heart
11 chr1:114172400-114182000 Weak transcription Fetal Muscle Leg muscle
12 chr1:114172400-114184600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr1:114172400-114192600 Weak transcription Pancreatic Islets Pancreatic Islet
14 chr1:114173000-114184600 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr1:114173000-114184600 Weak transcription Adipose Nuclei Adipose
16 chr1:114173000-114214400 Weak transcription Esophagus oesophagus
17 chr1:114173000-114226800 Weak transcription Aorta Aorta
18 chr1:114173200-114184600 Weak transcription Fetal Muscle Trunk muscle
19 chr1:114173200-114184600 Weak transcription Ovary ovary
20 chr1:114173400-114182800 Weak transcription Fetal Lung lung
21 chr1:114173400-114184600 Weak transcription Primary T cells from cord blood blood
22 chr1:114173600-114182000 Weak transcription Placenta Placenta
23 chr1:114173600-114183800 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr1:114173600-114184600 Weak transcription Liver Liver
25 chr1:114173600-114195000 Weak transcription HMEC breast
26 chr1:114173600-114206000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:114173800-114182000 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr1:114173800-114184600 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr1:114173800-114184600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:114173800-114196200 Weak transcription Gastric stomach
31 chr1:114173800-114199600 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr1:114173800-114201800 Weak transcription Colonic Mucosa Colon
33 chr1:114173800-114201800 Weak transcription Lung lung
34 chr1:114173800-114214400 Weak transcription Pancreas Pancrea
35 chr1:114173800-114236000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr1:114174000-114181000 Weak transcription Fetal Intestine Small intestine
37 chr1:114174000-114182000 Weak transcription Fetal Intestine Large intestine
38 chr1:114174000-114184600 Weak transcription Duodenum Mucosa Duodenum
39 chr1:114174000-114184600 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr1:114175400-114181800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr1:114179800-114239600 Weak transcription Spleen Spleen
42 chr1:114180400-114184600 Weak transcription Brain Angular Gyrus brain
43 chr1:114180800-114181200 Strong transcription Fetal Stomach stomach

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Last update: Aug 31, 2015