Variant report

Variant	rs12543072
Chromosome Location	chr8:10761961-10761962
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10088975	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10089764	0.81[AFR][1000 genomes]
rs10092968	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10093063	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10093310	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10095572	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10113176	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs11250090	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11250091	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12544511	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12547012	1.00[YRI][hapmap]
rs12550303	1.00[AFR][1000 genomes]
rs12550307	0.92[AFR][1000 genomes]
rs13439728	0.89[YRI][hapmap]
rs28664017	0.81[AFR][1000 genomes]
rs28673205	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1025190	chr8:10756331-10802566	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10753000-10763600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:10754200-10762000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:10761000-10762200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:10761600-10762000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:10761600-10763000	Enhancers	Fetal Muscle Trunk	muscle
6	chr8:10761600-10763200	Enhancers	Fetal Muscle Leg	muscle
7	chr8:10761600-10765400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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