Variant report

Variant	rs12543961
Chromosome Location	chr8:63868434-63868435
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10464903	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs10464904	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs10464905	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs10957265	0.86[AMR][1000 genomes]
rs10957266	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs10957268	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs10957269	1.00[CEU][hapmap]
rs10957270	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs12541047	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12541993	0.92[AMR][1000 genomes]
rs12543020	0.86[AMR][1000 genomes]
rs12545230	0.94[AMR][1000 genomes]
rs12545245	0.94[AMR][1000 genomes]
rs12546361	1.00[CEU][hapmap]
rs12547772	0.94[AMR][1000 genomes]
rs12547848	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12548172	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap]
rs12548729	0.86[AMR][1000 genomes]
rs12549172	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12675369	0.90[AMR][1000 genomes]
rs12676348	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs12676761	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12678042	0.82[AMR][1000 genomes]
rs12678214	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs12682385	0.84[AMR][1000 genomes]
rs16929941	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16929963	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16929988	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1963949	0.86[AMR][1000 genomes]
rs3758147	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs4534128	1.00[AFR][1000 genomes]
rs4737616	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap]
rs4737620	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4737621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737626	0.82[AMR][1000 genomes]
rs4739028	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4739031	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4739032	0.82[AMR][1000 genomes]
rs4739037	1.00[CEU][hapmap]
rs4739046	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs4739047	1.00[CEU][hapmap]
rs72656537	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72656540	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7818582	1.00[CEU][hapmap]
rs930840	1.00[CEU][hapmap];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890963	chr8:63846472-63885100	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv611447	chr8:63867493-63883593	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63859600-63877800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63867800-63868600	Enhancers	Fetal Brain Female	brain
3	chr8:63868200-63869200	Enhancers	Fetal Brain Male	brain

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