Variant report

Variant	rs12545097
Chromosome Location	chr8:49951977-49951978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10435575	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10504073	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10957317	0.85[EUR][1000 genomes]
rs10957363	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11990854	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12680366	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13268440	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13270448	0.83[ASN][1000 genomes]
rs1511363	0.87[EUR][1000 genomes]
rs1567555	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1828495	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858312	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1876717	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2137013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2385127	0.96[ASN][1000 genomes]
rs2385229	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2385230	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4873093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873094	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4873095	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4873099	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4873100	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4873303	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873310	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6983929	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6984804	1.00[ASW][hapmap];0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7005693	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7011891	0.89[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7013425	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7835336	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs974781	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12545097	SNTG1	cis	cerebellum	SCAN
rs12545097	C8orf22	cis	Muscle Skeletal	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49950600-49952200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:49951000-49952000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr8:49951200-49952400	Enhancers	Hela-S3	cervix
4	chr8:49951600-49952000	Enhancers	Brain Substantia Nigra	brain
5	chr8:49951600-49952000	Enhancers	Colon Smooth Muscle	Colon
6	chr8:49951600-49952000	Enhancers	Psoas Muscle	Psoas
7	chr8:49951600-49952600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr8:49951600-49952600	Enhancers	K562	blood
9	chr8:49951800-49952200	Enhancers	Right Atrium	heart
10	chr8:49951800-49952400	Enhancers	Stomach Smooth Muscle	stomach
11	chr8:49951800-49952600	Enhancers	Cortex derived primary cultured neurospheres	brain

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