Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99444054..99446996-chr8:99450505..99452269,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNS2-2	chr8:99448897-99451518	ENSG00000272321.1

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10099978	0.88[CEU][hapmap]
rs10100546	0.85[CEU][hapmap]
rs10955176	0.83[CEU][hapmap]
rs10955178	0.91[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs10955184	0.84[CEU][hapmap]
rs10955185	0.85[CEU][hapmap]
rs11774066	0.90[ASN][1000 genomes]
rs11985382	0.88[CEU][hapmap]
rs12541026	0.85[CEU][hapmap]
rs12542022	0.88[CEU][hapmap]
rs12542931	0.87[CEU][hapmap]
rs12544768	0.84[CEU][hapmap]
rs12547922	0.88[CEU][hapmap]
rs12548477	0.88[CEU][hapmap]
rs12549563	0.94[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550198	0.85[CEU][hapmap]
rs13257475	0.87[JPT][hapmap]
rs13258810	0.90[ASN][1000 genomes]
rs16892236	0.88[CEU][hapmap];0.83[JPT][hapmap];0.90[AFR][1000 genomes]
rs16896996	0.82[AMR][1000 genomes]
rs16897061	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs16897076	0.86[JPT][hapmap]
rs3802198	0.88[CEU][hapmap]
rs4236853	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301421	0.88[CEU][hapmap]
rs4332102	0.85[CEU][hapmap]
rs4370499	0.83[CEU][hapmap]
rs4618666	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4734407	0.88[CEU][hapmap]
rs7015739	0.88[CEU][hapmap]
rs7845395	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1034492	chr8:99436341-99456516	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99441400-99451600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:99441400-99451800	Weak transcription	Brain Anterior Caudate	brain
3	chr8:99441400-99458000	Weak transcription	Ovary	ovary
4	chr8:99441400-99472600	Weak transcription	Pancreas	Pancrea
5	chr8:99442000-99451600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:99449200-99451800	Enhancers	Osteobl	bone
7	chr8:99449400-99451200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:99449400-99451800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:99449600-99450800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr8:99449600-99450800	Enhancers	HSMMtube	muscle
11	chr8:99449600-99453200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:99450000-99451000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:99450000-99451400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:99450200-99451000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:99450400-99453000	Enhancers	Fetal Heart	heart
16	chr8:99450600-99450800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:99450600-99451800	Bivalent Enhancer	Fetal Brain Male	brain

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