Variant report

Variant	rs12546985
Chromosome Location	chr8:110237935-110237936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110237132..110238315-chr8:110294080..110295100,5	MCF-7	breast:
2	chr8:110237564..110238071-chr8:110338220..110338727,2	MCF-7	breast:

Extended variants
information (count: 259 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:252)

rs_ID	r²[population]
rs10081564	0.90[ASN][1000 genomes]
rs10088496	0.92[ASN][1000 genomes]
rs10089544	0.92[ASN][1000 genomes]
rs10091155	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10100690	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10101048	0.92[ASN][1000 genomes]
rs10101050	0.92[ASN][1000 genomes]
rs10101189	0.92[ASN][1000 genomes]
rs10101520	0.92[ASN][1000 genomes]
rs10464819	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464848	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464849	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955508	0.92[ASN][1000 genomes]
rs10955510	0.92[ASN][1000 genomes]
rs10955511	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955512	0.92[ASN][1000 genomes]
rs10955513	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10955514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775991	0.92[ASN][1000 genomes]
rs11778370	0.91[JPT][hapmap]
rs11785243	0.92[ASN][1000 genomes]
rs11785269	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs11985765	0.91[ASN][1000 genomes]
rs11986161	0.92[ASN][1000 genomes]
rs11992816	0.91[ASN][1000 genomes]
rs11994164	0.92[ASN][1000 genomes]
rs11994227	0.92[ASN][1000 genomes]
rs11995419	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11997974	0.92[ASN][1000 genomes]
rs12542811	0.92[ASN][1000 genomes]
rs12542959	0.92[ASN][1000 genomes]
rs12544150	0.92[ASN][1000 genomes]
rs12544197	0.83[CHB][hapmap]
rs12544503	0.92[ASN][1000 genomes]
rs12546169	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12549347	0.92[ASN][1000 genomes]
rs12549397	0.92[ASN][1000 genomes]
rs12550383	0.92[ASN][1000 genomes]
rs12674513	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12674533	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675753	0.92[ASN][1000 genomes]
rs12679958	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12680451	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12680886	0.91[ASN][1000 genomes]
rs12682610	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13251321	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13251597	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13257672	0.85[AMR][1000 genomes]
rs13265151	0.92[ASN][1000 genomes]
rs13269698	0.84[ASN][1000 genomes]
rs13270022	0.80[ASN][1000 genomes]
rs13282488	0.92[ASN][1000 genomes]
rs1380096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1380097	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1380098	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380099	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458922	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1458924	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458925	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458926	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1458927	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1548082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585295	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1585296	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1585297	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16892486	0.86[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap]
rs16892496	0.86[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap]
rs17364037	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1947630	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947631	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2007179	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2054255	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067780	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085627	0.82[ASN][1000 genomes]
rs2085628	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2085629	0.89[EUR][1000 genomes]
rs2125512	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2168965	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2199122	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28407429	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28413119	0.92[ASN][1000 genomes]
rs28437828	0.92[ASN][1000 genomes]
rs2882176	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28870477	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926191	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2926192	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2926198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926199	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2926202	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926203	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926204	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926207	0.85[ASN][1000 genomes]
rs2926209	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926213	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926216	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926217	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926218	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2926220	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926222	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2926223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2926245	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2926246	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2926247	0.93[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2926249	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2926250	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2926251	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2926254	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2926255	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2926256	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2926257	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2926258	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2926260	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2926261	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2926264	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2926265	0.86[JPT][hapmap]
rs2926268	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2926270	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2926271	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2926273	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2926275	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2926276	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2926279	0.83[ASN][1000 genomes]
rs2926283	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2980565	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2980587	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980590	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980592	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980595	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980596	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980597	0.85[ASN][1000 genomes]
rs2980598	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980599	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980601	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980604	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980605	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2980608	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2980609	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980610	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2980612	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2980613	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2980615	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2980616	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2980617	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2980618	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2980619	0.82[CHD][hapmap];0.87[JPT][hapmap]
rs2980622	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2980623	0.86[JPT][hapmap]
rs2980624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2980629	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2980631	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2980633	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2980634	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2980635	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980638	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134105	0.82[CHB][hapmap]
rs3134471	0.84[ASN][1000 genomes]
rs34049275	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34979579	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35850605	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35978837	0.92[ASN][1000 genomes]
rs3890699	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3925087	0.86[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap]
rs4034230	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4129682	0.87[JPT][hapmap]
rs4130640	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4130682	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs4236801	0.86[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap]
rs4236803	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4236804	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4257986	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4265160	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4273834	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4288351	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4291240	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4301422	0.91[JPT][hapmap]
rs4311632	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4332104	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4339614	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4342559	0.91[JPT][hapmap]
rs4358779	0.92[ASN][1000 genomes]
rs4386952	0.91[CHB][hapmap];0.81[CHD][hapmap]
rs4389899	0.92[ASN][1000 genomes]
rs4389900	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4428648	0.92[ASN][1000 genomes]
rs4439099	0.92[ASN][1000 genomes]
rs4442117	0.92[ASN][1000 genomes]
rs4443632	0.92[ASN][1000 genomes]
rs4446710	0.86[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap]
rs4454252	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4464939	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs4529440	0.92[ASN][1000 genomes]
rs4546626	0.86[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap]
rs4570131	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4604407	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4645539	0.92[ASN][1000 genomes]
rs4734196	0.92[ASN][1000 genomes]
rs4734197	0.92[ASN][1000 genomes]
rs4734198	0.92[ASN][1000 genomes]
rs4734203	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734204	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734205	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4734209	0.91[ASN][1000 genomes]
rs4734210	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735092	0.86[JPT][hapmap]
rs4735093	0.87[JPT][hapmap]
rs4735094	0.91[JPT][hapmap]
rs4735097	0.86[ASN][1000 genomes]
rs4735098	0.86[ASN][1000 genomes]
rs4735108	0.92[ASN][1000 genomes]
rs4735109	0.92[ASN][1000 genomes]
rs4735110	0.92[ASN][1000 genomes]
rs4735114	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735116	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735118	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4735121	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735122	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55765942	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56896876	0.92[ASN][1000 genomes]
rs62511091	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6469245	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6983369	0.85[ASN][1000 genomes]
rs6983376	0.92[ASN][1000 genomes]
rs6985869	0.90[ASN][1000 genomes]
rs6986127	0.91[ASN][1000 genomes]
rs6988041	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6990140	0.92[ASN][1000 genomes]
rs6994788	0.90[ASN][1000 genomes]
rs6998731	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6998883	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7004206	0.83[ASN][1000 genomes]
rs7008174	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7010380	0.92[ASN][1000 genomes]
rs71526729	0.84[ASN][1000 genomes]
rs720574	1.00[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs7817746	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7817909	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7823804	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7825689	0.92[ASN][1000 genomes]
rs7828207	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7829544	0.86[ASN][1000 genomes]
rs7832552	0.86[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap]
rs7844643	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7845815	0.92[ASN][1000 genomes]
rs922044	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9297421	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023204	chr8:110169573-110303085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1031663	chr8:110177432-110303085	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891272	chr8:110217266-110268104	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv891274	chr8:110224047-110308776	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv891275	chr8:110224047-110319234	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv891276	chr8:110232329-110308776	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12546985	NUDCD1	cis	cerebellum	SCAN
rs12546985	PKHD1L1	cis	multi-tissue	Pritchard
rs12546985	PKHD1L1	cis	lymphoblastoid	seeQTL

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110211200-110311600	Weak transcription	Right Ventricle	heart
2	chr8:110225800-110241800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:110230400-110241000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:110231000-110238600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:110231800-110242200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:110233600-110239000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:110234200-110241200	Weak transcription	HUVEC	blood vessel
8	chr8:110234600-110240400	Weak transcription	HMEC	breast
9	chr8:110234800-110238000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:110234800-110264200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr8:110235000-110239000	Weak transcription	Liver	Liver
12	chr8:110235000-110239800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:110235000-110240600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:110235000-110251000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr8:110235200-110241400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:110235400-110238600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:110235400-110271400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr8:110235400-110275000	Weak transcription	Fetal Brain Male	brain
19	chr8:110235600-110244000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:110235800-110238200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:110235800-110238200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr8:110235800-110238200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
23	chr8:110235800-110238200	ZNF genes & repeats	Fetal Muscle Leg	muscle
24	chr8:110235800-110239400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:110235800-110240400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:110235800-110241000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:110235800-110251200	Weak transcription	Fetal Intestine Large	intestine
28	chr8:110235800-110252600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:110236000-110264200	Weak transcription	Spleen	Spleen
30	chr8:110236000-110265400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr8:110236200-110239000	Weak transcription	Dnd41	blood
32	chr8:110236200-110241000	Weak transcription	NH-A	brain
33	chr8:110236200-110244200	Weak transcription	Fetal Stomach	stomach
34	chr8:110236200-110264200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr8:110236200-110308800	Weak transcription	Thymus	Thymus
36	chr8:110236200-110309200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr8:110236400-110238200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
38	chr8:110236400-110240600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:110236400-110241200	Weak transcription	NHDF-Ad	bronchial
40	chr8:110236400-110257400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr8:110236600-110238000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr8:110236600-110238200	Strong transcription	Primary B cells from cord blood	blood
43	chr8:110236600-110240600	Weak transcription	Brain Germinal Matrix	brain
44	chr8:110236600-110244000	Weak transcription	Brain Angular Gyrus	brain
45	chr8:110236600-110245400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr8:110236600-110251200	Weak transcription	GM12878-XiMat	blood
47	chr8:110236600-110264200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr8:110236600-110344200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr8:110236800-110238200	ZNF genes & repeats	Ovary	ovary
50	chr8:110237000-110238200	Strong transcription	Adipose Nuclei	Adipose

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