Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:63878030..63880245-chr8:63911061..63912789,2	K562	blood:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10957265	0.83[AMR][1000 genomes]
rs10957266	0.83[AMR][1000 genomes]
rs10957268	0.83[AMR][1000 genomes]
rs12541047	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541993	0.89[AMR][1000 genomes]
rs12543020	0.83[AMR][1000 genomes]
rs12543961	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12545230	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12545245	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12547772	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12548729	0.83[AMR][1000 genomes]
rs12549172	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12675369	0.87[AMR][1000 genomes]
rs12676348	0.83[AMR][1000 genomes]
rs12676761	0.97[ASN][1000 genomes]
rs12682385	0.81[AMR][1000 genomes]
rs16929941	0.97[ASN][1000 genomes]
rs16929963	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929988	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1963949	0.83[AMR][1000 genomes]
rs4737620	0.97[ASN][1000 genomes]
rs4737621	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4739028	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4739031	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4739032	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4739047	0.83[AMR][1000 genomes]
rs72656537	0.98[ASN][1000 genomes]
rs72656540	0.98[ASN][1000 genomes]
rs7818582	0.83[AMR][1000 genomes]
rs930840	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv890963	chr8:63846472-63885100	Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv890964	chr8:63848556-63898146	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv611447	chr8:63867493-63883593	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3367945	chr8:63879250-63879595	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63868600-63895800	Weak transcription	Fetal Brain Female	brain
2	chr8:63877800-63880200	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:63878000-63892000	Weak transcription	Brain Germinal Matrix	brain

Quick Search: