Variant report

Variant	rs12547849
Chromosome Location	chr8:100026275-100026276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr8:100024608-100026341	MCF-7	breast:	n/a	n/a
2	POLR2A	chr8:100024261-100026305	GM12891	blood:	n/a	n/a
3	MTA3	chr8:100024230-100026277	GM12878	blood:	n/a	n/a
4	PML	chr8:100024711-100026278	GM12878	blood:	n/a	n/a
5	UBTF	chr8:100024670-100026303	K562	blood:	n/a	n/a
6	MAX	chr8:100024598-100026302	MCF-7	breast:	n/a	chr8:100025597-100025607
7	SIN3AK20	chr8:100024398-100026456	MCF-7	breast:	n/a	n/a
8	GABPA	chr8:100024500-100026344	MCF-7	breast:	n/a	chr8:100025202-100025216
9	ELF1	chr8:100024649-100026279	MCF-7	breast:	n/a	chr8:100025484-100025493 chr8:100025203-100025215 chr8:100025253-100025264 chr8:100025201-100025210
10	STAT3	chr8:100026256-100026308	MCF10A-Er-Src	breast:	n/a	n/a
11	RCOR1	chr8:100024586-100027052	K562	blood:	n/a	n/a
12	ZNF384	chr8:100025063-100027080	K562	blood:	n/a	n/a
13	IRF1	chr8:100024407-100026287	K562	blood:	n/a	n/a
14	GATA1	chr8:100024141-100026319	PBDE	blood:	n/a	chr8:100024663-100024679
15	RCOR1	chr8:100024773-100026297	Hela-S3	cervix:	n/a	n/a
16	TEAD4	chr8:100024618-100026305	K562	blood:	n/a	n/a
17	JUND	chr8:100024689-100026331	K562	blood:	n/a	n/a
18	ZNF384	chr8:100026076-100026476	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:99952762..99963438-chr8:100019139..100031293,37	MCF-7	breast:
2	chr8:99953586..99962238-chr8:100023509..100028680,26	MCF-7	breast:
3	chr8:100013186..100018258-chr8:100022769..100026424,8	MCF-7	breast:
4	chr8:100025901..100029663-chr8:100033487..100035486,3	K562	blood:
5	chr8:100011149..100013712-chr8:100025594..100027308,2	K562	blood:
6	chr8:100024284..100027084-chr8:100113982..100120280,5	MCF-7	breast:
7	chr8:100025833..100028756-chr8:100100624..100103335,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253948	TF binding region
ENSG00000263842	Chromatin interaction
ENSG00000132549	Chromatin interaction
ENSG00000271930	Chromatin interaction
ENSG00000253180	Chromatin interaction
ENSG00000104375	Chromatin interaction
ENSG00000164920	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10087533	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10088152	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10091793	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10092190	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10094807	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs10096925	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10098153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10104826	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10106041	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10108567	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10109066	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10216478	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10808363	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10808364	0.87[AMR][1000 genomes]
rs10955192	0.95[JPT][hapmap]
rs10955194	0.95[JPT][hapmap]
rs10955196	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs10955197	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10955202	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11786078	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11988987	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs12547301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12550128	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12680054	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13256012	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13277925	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1447245	1.00[YRI][hapmap]
rs17373806	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs28886569	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2922066	0.83[GIH][hapmap]
rs2922070	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019295	0.82[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.90[TSI][hapmap]
rs3019296	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34211616	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34836224	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35018432	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4131359	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4132545	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs4133425	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4236854	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4260868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4307310	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4317539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4319053	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4327836	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4374957	0.95[JPT][hapmap]
rs4380901	0.95[JPT][hapmap]
rs4394363	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4428646	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4455798	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4461878	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4481561	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4489303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4510823	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs4520132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4552872	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4612311	0.95[JPT][hapmap]
rs4734419	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs4734420	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs4734421	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4734426	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs4735589	0.95[JPT][hapmap]
rs4735592	0.84[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs4735603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4735604	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4735607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5019794	0.95[JPT][hapmap]
rs55691643	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55837765	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55871624	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56315283	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60950457	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60967421	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6415433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6468647	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6468659	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6468663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6468664	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs6468665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6468668	0.95[JPT][hapmap]
rs6468669	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6468671	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6468675	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6651157	0.82[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs6986710	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6989201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6990741	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6991283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6991585	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6992480	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6993878	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6997225	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6999263	0.84[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap]
rs7006391	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7007494	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7011648	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7011936	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7012513	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs7016044	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7016304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7017261	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72668476	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72668483	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72670294	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72670297	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72670301	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72672309	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72672313	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7341605	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7459833	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs7460376	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7461275	0.86[AMR][1000 genomes]
rs7461615	0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs7462457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7815414	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7818037	0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap]
rs7818051	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7824113	0.95[JPT][hapmap]
rs7835084	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7836899	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7840337	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7842393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9297289	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9642956	0.84[ASN][1000 genomes]
rs9642958	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1023227	chr8:99902615-100290948	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv539692	chr8:99902615-100290948	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	esv1803951	chr8:99922754-100191783	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv611809	chr8:99925628-100093510	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv531505	chr8:99932947-100464147	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv1020174	chr8:99978271-100168938	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv539693	chr8:99978271-100168938	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv891221	chr8:100016505-100156391	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	esv3384926	chr8:100026040-100027833	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12547849	ARHGEF12	trans	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100023200-100027200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:100023200-100027200	Active TSS	K562	blood
3	chr8:100023600-100027000	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr8:100023800-100026400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:100024000-100026800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:100024000-100026800	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr8:100024000-100027200	Active TSS	NHLF	lung
8	chr8:100024200-100026400	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr8:100024200-100026400	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr8:100024200-100026400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:100024200-100026600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:100024200-100026600	Active TSS	NH-A	brain
13	chr8:100024200-100026800	Active TSS	Muscle Satellite Cultured Cells	--
14	chr8:100024200-100027000	Active TSS	HSMMtube	muscle
15	chr8:100024400-100026400	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr8:100024400-100026400	Active TSS	H1 Cell Line	embryonic stem cell
17	chr8:100024400-100026400	Active TSS	H9 Cell Line	embryonic stem cell
18	chr8:100024400-100026400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
19	chr8:100024400-100026400	Active TSS	Aorta	Aorta
20	chr8:100024400-100026800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:100024400-100026800	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr8:100024400-100027000	Active TSS	Ovary	ovary
23	chr8:100024400-100027200	Active TSS	NHDF-Ad	bronchial
24	chr8:100024600-100026400	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr8:100024600-100026400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:100024600-100026400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr8:100024600-100026400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:100024600-100026400	Active TSS	Brain Anterior Caudate	brain
29	chr8:100024600-100026400	Active TSS	Brain Cingulate Gyrus	brain
30	chr8:100024600-100026400	Active TSS	Brain Hippocampus Middle	brain
31	chr8:100024600-100026400	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr8:100024600-100026400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr8:100024600-100026400	Active TSS	Colonic Mucosa	Colon
34	chr8:100024600-100026400	Active TSS	Duodenum Mucosa	Duodenum
35	chr8:100024600-100026400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr8:100024600-100026400	Active TSS	Fetal Heart	heart
37	chr8:100024600-100026400	Active TSS	Fetal Intestine Large	intestine
38	chr8:100024600-100026400	Active TSS	Fetal Intestine Small	intestine
39	chr8:100024600-100026400	Active TSS	Placenta	Placenta
40	chr8:100024600-100026400	Active TSS	Fetal Thymus	thymus
41	chr8:100024600-100026400	Active TSS	Pancreas	Pancrea
42	chr8:100024600-100026400	Active TSS	Psoas Muscle	Psoas
43	chr8:100024600-100026400	Active TSS	Right Ventricle	heart
44	chr8:100024600-100026400	Active TSS	Stomach Smooth Muscle	stomach
45	chr8:100024600-100026600	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr8:100024600-100026600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr8:100024600-100026600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr8:100024600-100026600	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr8:100024600-100026600	Active TSS	Fetal Stomach	stomach
50	chr8:100024600-100026600	Active TSS	Right Atrium	heart

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