Variant report

Variant	rs12556097
Chromosome Location	chrX:31577744-31577745
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531098	chrX:31462522-31824884	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv481719	chrX:31470100-31807209	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv497882	chrX:31537077-31619941	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv481814	chrX:31566314-32058570	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv3340020	chrX:31577350-31577872	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3484145	chrX:31577350-31577877	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3510627	chrX:31577357-31577906	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3510626	chrX:31577379-31577824	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3484148	chrX:31577381-31577858	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3484147	chrX:31577398-31577856	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3510628	chrX:31577411-31577835	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3484146	chrX:31577416-31577808	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3510625	chrX:31577439-31577837	Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3926	chrX:31577440-31577840	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3484149	chrX:31577465-31577795	Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3510629	chrX:31577465-31577795	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31574000-31578000	Weak transcription	HSMMtube	muscle
2	chrX:31574000-31583600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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