Variant report

Variant	rs12562172
Chromosome Location	chr1:220660569-220660570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr1:220660411-220661619	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ENSG00000231529	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12562165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562686	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12563333	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563560	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563619	0.91[EUR][1000 genomes]
rs12564062	0.91[EUR][1000 genomes]
rs12568872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568969	0.82[JPT][hapmap];0.91[EUR][1000 genomes]
rs13375694	0.95[ASN][1000 genomes]
rs1338775	0.87[EUR][1000 genomes]
rs17007981	1.00[JPT][hapmap]
rs1933881	0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs2786605	1.00[YRI][hapmap]
rs55875950	0.91[EUR][1000 genomes]
rs56659017	0.91[EUR][1000 genomes]
rs57725868	0.91[EUR][1000 genomes]
rs58948810	0.82[ASN][1000 genomes]
rs60807411	0.82[ASN][1000 genomes]
rs60843898	0.91[EUR][1000 genomes]
rs6669351	0.86[EUR][1000 genomes]
rs6685446	0.82[JPT][hapmap];0.91[EUR][1000 genomes]
rs6688366	0.91[EUR][1000 genomes]
rs73092253	0.91[EUR][1000 genomes]
rs73092254	0.91[EUR][1000 genomes]
rs73092256	0.91[EUR][1000 genomes]
rs73092261	0.91[EUR][1000 genomes]
rs73092264	0.91[EUR][1000 genomes]
rs73092269	0.91[EUR][1000 genomes]
rs73092271	0.91[EUR][1000 genomes]
rs73092272	0.91[EUR][1000 genomes]
rs73092273	0.91[EUR][1000 genomes]
rs73092281	0.91[EUR][1000 genomes]
rs73092282	0.91[EUR][1000 genomes]
rs74139652	0.91[EUR][1000 genomes]
rs74139653	0.91[EUR][1000 genomes]
rs74139660	0.91[EUR][1000 genomes]
rs74139668	0.91[EUR][1000 genomes]
rs74139669	0.91[EUR][1000 genomes]
rs7516373	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7522502	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7530302	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7537705	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220657000-220660800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:220657600-220660600	Weak transcription	Hela-S3	cervix
3	chr1:220658600-220665800	Weak transcription	Adipose Nuclei	Adipose
4	chr1:220659200-220660600	Weak transcription	Placenta	Placenta
5	chr1:220659400-220660600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:220660000-220661200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr1:220660000-220661400	Enhancers	Fetal Intestine Large	intestine
8	chr1:220660200-220660600	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr1:220660200-220661200	Enhancers	Fetal Intestine Small	intestine
10	chr1:220660200-220661400	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr1:220660400-220661200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:220660400-220661400	Enhancers	Stomach Mucosa	stomach
13	chr1:220660400-220661600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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