Variant report

Variant	rs12562581
Chromosome Location	chr1:224891765-224891766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224890636..224894116-chr1:224907021..224910162,3	MCF-7	breast:
2	chr1:224884331..224887289-chr1:224890034..224891821,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1036431	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1039265	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10495227	0.93[CEU][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10915691	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10915693	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10915695	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11805320	0.91[CEU][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12058085	0.93[CEU][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12060334	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12062831	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12065840	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12068125	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12072810	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12073052	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12088524	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12092532	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12567125	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1337538	0.84[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1465766	0.85[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1465767	0.93[CEU][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16850786	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4363402	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61603030	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61827113	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61827152	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6426147	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6690131	0.81[CEU][hapmap]
rs7541279	0.86[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7554310	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
2	chr1:224881400-224895400	Weak transcription	Ovary	ovary
3	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
4	chr1:224885600-224895200	Weak transcription	NH-A	brain
5	chr1:224885800-224895200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:224888400-224894200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:224888800-224895600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:224889000-224892600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:224889800-224895600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:224890800-224892200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:224890800-224892200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:224890800-224892400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr1:224891000-224892000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:224891000-224892600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:224891200-224892000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:224891200-224892000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:224891200-224892000	Strong transcription	NHLF	lung
18	chr1:224891400-224892000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:224891400-224892400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr1:224891400-224892400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr1:224891400-224893200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:224891600-224891800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
23	chr1:224891600-224892000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:224891600-224892000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:224891600-224892000	Enhancers	NHDF-Ad	bronchial
26	chr1:224891600-224892200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr1:224891600-224892400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr1:224891600-224892400	Strong transcription	Dnd41	blood

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