Variant report

Variant	rs12563461
Chromosome Location	chr1:76675168-76675169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10218628	0.81[AMR][1000 genomes]
rs10873867	0.96[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10873869	1.00[CHB][hapmap]
rs11162091	0.96[CEU][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11162092	0.96[CEU][hapmap];0.81[YRI][hapmap]
rs11162093	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11162095	0.96[CEU][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11162096	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11162097	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12024701	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12035017	0.81[AMR][1000 genomes]
rs12048024	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12048928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12402760	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12731715	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1486934	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1486935	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1591472	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs1601640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1999734	1.00[CHB][hapmap]
rs2631796	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2706193	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2783985	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs479650	0.89[JPT][hapmap]
rs4949696	0.96[CEU][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4949697	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs4949698	0.82[AMR][1000 genomes]
rs519797	0.81[JPT][hapmap]
rs531773	0.81[JPT][hapmap]
rs533097	0.81[JPT][hapmap]
rs536913	0.81[JPT][hapmap]
rs569850	0.81[JPT][hapmap]
rs572623	0.81[JPT][hapmap]
rs573657	0.81[JPT][hapmap]
rs580928	0.81[JPT][hapmap]
rs7534207	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7539882	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7542080	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7556363	0.96[CEU][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1801297	chr1:76673530-76686142	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76674600-76676600	Enhancers	Primary T cells from cord blood	blood
2	chr1:76674600-76676800	Enhancers	Fetal Thymus	thymus
3	chr1:76674800-76676800	Enhancers	Thymus	Thymus
4	chr1:76675000-76675200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:76675000-76675200	ZNF genes & repeats	Aorta	Aorta
6	chr1:76675000-76676200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:76675000-76676200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:76675000-76676400	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:76675000-76676400	Enhancers	Primary hematopoietic stem cells	blood
10	chr1:76675000-76676600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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