Variant report

Variant	rs1256492
Chromosome Location	chr14:65711387-65711388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65703266..65707350-chr14:65709369..65712516,3	K562	blood:
2	chr14:65691185..65703550-chr14:65706694..65715001,23	MCF-7	breast:
3	chr14:65710525..65712418-chr14:65882853..65884868,2	MCF-7	breast:
4	chr14:65708443..65711390-chr14:65727270..65732025,4	MCF-7	breast:
5	chr14:65583338..65585299-chr14:65708352..65712057,3	MCF-7	breast:
6	chr14:65708389..65714331-chr14:65715596..65724154,17	MCF-7	breast:
7	chr14:65708249..65716123-chr14:65876687..65882798,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction
ENSG00000258878	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11158584	0.80[AFR][1000 genomes]
rs12436594	0.80[AFR][1000 genomes]
rs1256481	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256483	0.84[EUR][1000 genomes]
rs1256485	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256487	0.95[EUR][1000 genomes]
rs1256488	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1256489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256496	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256497	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256498	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1262271	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1270077	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1760969	0.94[EUR][1000 genomes]
rs2086465	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57454873	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59978001	0.91[EUR][1000 genomes]
rs61170796	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61989807	0.91[EUR][1000 genomes]
rs7142218	0.91[EUR][1000 genomes]
rs7142951	0.91[EUR][1000 genomes]
rs7146907	0.91[EUR][1000 genomes]
rs72712447	1.00[ASN][1000 genomes]
rs8015540	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564934	chr14:65706758-65712872	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv976853	chr14:65708032-65723266	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3530160	chr14:65709103-65713060	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3530161	chr14:65709131-65713034	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3530162	chr14:65709136-65713012	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3530163	chr14:65709233-65712969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv18660	chr14:65709258-65712968	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv564935	chr14:65710211-65711755	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv564936	chr14:65710211-65711837	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv564937	chr14:65710211-65712309	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv516371	chr14:65710211-65712420	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv564938	chr14:65710211-65712420	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv817636	chr14:65710211-65712420	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv564939	chr14:65710211-65712667	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv564940	chr14:65710211-65712872	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv564941	chr14:65710301-65711755	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	nsv564942	chr14:65710301-65712126	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	nsv564943	chr14:65710301-65712872	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv564944	chr14:65710301-65713314	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	esv1795814	chr14:65710580-65711755	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	esv1798267	chr14:65710580-65711755	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	nsv564945	chr14:65710580-65712309	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	nsv564946	chr14:65710580-65712872	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	nsv564947	chr14:65710756-65712420	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	nsv564948	chr14:65711180-65712420	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	nsv564949	chr14:65711180-65712872	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	nsv564950	chr14:65711290-65712872	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65703400-65711800	Enhancers	Fetal Intestine Small	intestine
3	chr14:65706600-65718200	Weak transcription	Spleen	Spleen
4	chr14:65706800-65716200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:65707000-65716200	Weak transcription	Brain Anterior Caudate	brain
6	chr14:65708400-65716200	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:65708400-65716200	Weak transcription	Brain Substantia Nigra	brain
8	chr14:65709000-65713200	Enhancers	Fetal Intestine Large	intestine
9	chr14:65709200-65711400	Flanking Active TSS	A549	lung
10	chr14:65709800-65711600	Enhancers	NH-A	brain
11	chr14:65710000-65711400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr14:65710000-65711600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:65710000-65711800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:65710000-65712800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr14:65710400-65711400	Enhancers	NHDF-Ad	bronchial
16	chr14:65710400-65711600	Enhancers	Primary T cells fromperipheralblood	blood
17	chr14:65710400-65711600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr14:65710400-65711600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr14:65710400-65711600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr14:65710400-65711600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr14:65710400-65711600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr14:65710400-65711600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr14:65710400-65711600	Enhancers	Fetal Thymus	thymus
24	chr14:65710400-65711600	Enhancers	Small Intestine	intestine
25	chr14:65710400-65711800	Enhancers	Stomach Mucosa	stomach
26	chr14:65710600-65711400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:65710600-65711400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr14:65710600-65711400	Enhancers	GM12878-XiMat	blood
29	chr14:65710600-65711600	Genic enhancers	Primary B cells from peripheral blood	blood
30	chr14:65710600-65711600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr14:65710600-65711600	Flanking Active TSS	HUVEC	blood vessel
32	chr14:65710600-65712800	Enhancers	Primary T cells from cord blood	blood
33	chr14:65710800-65711600	Enhancers	Primary hematopoietic stem cells	blood
34	chr14:65710800-65711600	Flanking Active TSS	Dnd41	blood
35	chr14:65710800-65716800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:65711000-65711400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr14:65711000-65711600	Enhancers	HepG2	liver
38	chr14:65711000-65716200	Weak transcription	Pancreas	Pancrea
39	chr14:65711200-65711600	Enhancers	K562	blood
40	chr14:65711200-65712200	Weak transcription	Thymus	Thymus
41	chr14:65711200-65716200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:65711200-65717000	Weak transcription	Osteobl	bone
43	chr14:65711200-65719000	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links