Variant report

Variant	rs1256498
Chromosome Location	chr14:65712889-65712890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65711767..65715817-chr14:65877100..65880952,4	MCF-7	breast:
2	chr14:65709528..65711067-chr14:65712244..65714160,2	MCF-7	breast:
3	chr14:65691185..65703550-chr14:65706694..65715001,23	MCF-7	breast:
4	chr14:65708389..65714331-chr14:65715596..65724154,17	MCF-7	breast:
5	chr14:65708249..65716123-chr14:65876687..65882798,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction
ENSG00000258878	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11158584	0.80[AFR][1000 genomes]
rs12436594	0.80[AFR][1000 genomes]
rs1256481	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256483	0.82[EUR][1000 genomes]
rs1256485	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256487	0.93[EUR][1000 genomes]
rs1256488	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1256489	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256490	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256491	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256492	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256493	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256495	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256496	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1256497	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1262271	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1270077	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1760969	0.92[EUR][1000 genomes]
rs2086465	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57454873	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59978001	0.93[EUR][1000 genomes]
rs61170796	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61989807	0.93[EUR][1000 genomes]
rs7142218	0.93[EUR][1000 genomes]
rs7142951	0.93[EUR][1000 genomes]
rs7146907	0.93[EUR][1000 genomes]
rs72712447	1.00[ASN][1000 genomes]
rs8015540	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv976853	chr14:65708032-65723266	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3530160	chr14:65709103-65713060	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3530161	chr14:65709131-65713034	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3530162	chr14:65709136-65713012	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3530163	chr14:65709233-65712969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv18660	chr14:65709258-65712968	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv564944	chr14:65710301-65713314	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65706600-65718200	Weak transcription	Spleen	Spleen
3	chr14:65706800-65716200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:65707000-65716200	Weak transcription	Brain Anterior Caudate	brain
5	chr14:65708400-65716200	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:65708400-65716200	Weak transcription	Brain Substantia Nigra	brain
7	chr14:65709000-65713200	Enhancers	Fetal Intestine Large	intestine
8	chr14:65710800-65716800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:65711000-65716200	Weak transcription	Pancreas	Pancrea
10	chr14:65711200-65716200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:65711200-65717000	Weak transcription	Osteobl	bone
12	chr14:65711200-65719000	Weak transcription	Hela-S3	cervix
13	chr14:65711400-65717000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:65711600-65713000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr14:65711600-65716000	Weak transcription	HepG2	liver
16	chr14:65711600-65722600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr14:65712400-65713000	Enhancers	Stomach Mucosa	stomach
18	chr14:65712400-65713000	Weak transcription	Thymus	Thymus
19	chr14:65712800-65716000	Weak transcription	HUVEC	blood vessel
20	chr14:65712800-65716400	Weak transcription	A549	lung
21	chr14:65712800-65721600	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links