Variant report

Variant	rs1256507
Chromosome Location	chr14:65730521-65730522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1256504	0.98[AFR][1000 genomes]
rs1256514	0.88[LWK][hapmap]
rs4632059	0.83[LWK][hapmap]
rs4902395	0.82[YRI][hapmap]
rs7147856	0.82[YRI][hapmap]
rs899963	0.84[ASW][hapmap];0.81[MKK][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65714000-65735400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:65727200-65735000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr14:65727400-65749600	Weak transcription	Gastric	stomach
5	chr14:65729800-65730600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:65729800-65730600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr14:65729800-65730600	Enhancers	Stomach Mucosa	stomach
8	chr14:65729800-65731000	Enhancers	Fetal Intestine Large	intestine
9	chr14:65729800-65731000	Enhancers	Fetal Intestine Small	intestine
10	chr14:65730000-65730600	Enhancers	HSMM	muscle
11	chr14:65730200-65734400	Weak transcription	Pancreas	Pancrea
12	chr14:65730200-65734600	Weak transcription	HepG2	liver
13	chr14:65730400-65733400	Weak transcription	HMEC	breast
14	chr14:65730400-65734600	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links