Variant report

Variant	rs1256532
Chromosome Location	chr14:65750874-65750875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65748171..65751140-chr14:65753934..65755557,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10131559	1.00[EUR][1000 genomes]
rs1256529	1.00[EUR][1000 genomes]
rs1256530	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1256535	1.00[EUR][1000 genomes]
rs1256545	1.00[EUR][1000 genomes]
rs55791657	1.00[EUR][1000 genomes]
rs58419427	1.00[EUR][1000 genomes]
rs59483989	1.00[EUR][1000 genomes]
rs61735911	1.00[EUR][1000 genomes]
rs6573603	1.00[EUR][1000 genomes]
rs7144841	1.00[EUR][1000 genomes]
rs7157687	1.00[EUR][1000 genomes]
rs73278008	0.95[ASN][1000 genomes]
rs74056715	1.00[EUR][1000 genomes]
rs74056720	1.00[EUR][1000 genomes]
rs74059024	1.00[EUR][1000 genomes]
rs8004406	1.00[EUR][1000 genomes]
rs8014200	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv515522	chr14:65746566-65771110	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65747600-65758400	Weak transcription	Pancreas	Pancrea
2	chr14:65748400-65752200	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:65748800-65751000	Enhancers	Spleen	Spleen
4	chr14:65748800-65751400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:65748800-65751400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:65749200-65751000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr14:65749200-65751200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:65749400-65751000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:65749400-65752200	Enhancers	Primary B cells from cord blood	blood
10	chr14:65749600-65753800	Weak transcription	Right Ventricle	heart
11	chr14:65749800-65751200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr14:65749800-65751200	Enhancers	Stomach Mucosa	stomach
13	chr14:65749800-65752200	Enhancers	Brain Angular Gyrus	brain
14	chr14:65749800-65752200	Enhancers	Brain Hippocampus Middle	brain
15	chr14:65749800-65752200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr14:65749800-65752600	Enhancers	Primary T cells from cord blood	blood
17	chr14:65749800-65753600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr14:65749800-65753800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:65749800-65753800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:65749800-65753800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr14:65749800-65753800	Weak transcription	Dnd41	blood
22	chr14:65749800-65754400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr14:65750000-65751000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:65750000-65751400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr14:65750000-65754600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr14:65750000-65757800	Weak transcription	NHEK	skin
27	chr14:65750200-65751400	Weak transcription	NHLF	lung
28	chr14:65750200-65751800	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr14:65750200-65752600	Enhancers	Brain Cingulate Gyrus	brain
30	chr14:65750200-65753200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:65750200-65754000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr14:65750400-65751400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:65750400-65751400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr14:65750400-65752000	Enhancers	Stomach Smooth Muscle	stomach
35	chr14:65750400-65752200	Enhancers	Brain Substantia Nigra	brain
36	chr14:65750400-65752400	Weak transcription	HSMMtube	muscle
37	chr14:65750400-65752600	Enhancers	GM12878-XiMat	blood
38	chr14:65750400-65753200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr14:65750400-65753200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:65750400-65753200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:65750400-65753200	Weak transcription	Thymus	Thymus
42	chr14:65750400-65753400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:65750400-65753800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr14:65750400-65753800	Weak transcription	Gastric	stomach
45	chr14:65750400-65754000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr14:65750400-65754200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr14:65750400-65754400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr14:65750400-65755800	Weak transcription	NHDF-Ad	bronchial
49	chr14:65750400-65756800	Weak transcription	Osteobl	bone
50	chr14:65750600-65751000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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