Variant report

Variant	rs12565764
Chromosome Location	chr1:92953495-92953496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12565227	0.87[ASN][1000 genomes]
rs17131655	0.87[ASN][1000 genomes]
rs41286813	0.87[ASN][1000 genomes]
rs56695578	0.87[ASN][1000 genomes]
rs6699723	0.87[ASN][1000 genomes]
rs74101322	0.87[ASN][1000 genomes]
rs969698	0.87[ASN][1000 genomes]
rs9803725	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3421594	chr1:92950889-92953737	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92952200-92954000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
2	chr1:92952600-92954200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr1:92952800-92953600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:92952800-92953800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:92952800-92954200	Enhancers	Fetal Thymus	thymus
6	chr1:92952800-92955000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:92952800-92991400	Weak transcription	Pancreas	Pancrea
8	chr1:92953000-92954000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:92953000-92954400	Enhancers	Primary T cells from cord blood	blood
10	chr1:92953200-92953800	Enhancers	GM12878-XiMat	blood
11	chr1:92953200-92954000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr1:92953200-92957600	Weak transcription	HepG2	liver
13	chr1:92953200-92960400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:92953400-92953800	Enhancers	Thymus	Thymus
15	chr1:92953400-92954000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr1:92953400-92954200	Enhancers	Dnd41	blood
17	chr1:92953400-92954400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr1:92953400-92955800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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