Variant report
| Variant | rs12566076 |
|---|---|
| Chromosome Location | chr1:71239931-71239932 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11804440 | 0.92[EUR][1000 genomes] |
| rs11805293 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs11805731 | 0.99[ASN][1000 genomes] |
| rs11807666 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs11808587 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs11808606 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs11809115 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs12562897 | 0.97[ASN][1000 genomes] |
| rs13306022 | 0.92[EUR][1000 genomes] |
| rs34115027 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34247575 | 0.92[EUR][1000 genomes] |
| rs34580971 | 0.92[EUR][1000 genomes] |
| rs35284022 | 0.92[EUR][1000 genomes] |
| rs35327754 | 0.92[EUR][1000 genomes] |
| rs35946140 | 0.92[EUR][1000 genomes] |
| rs35952145 | 0.92[EUR][1000 genomes] |
| rs41287914 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57313668 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs58239962 | 0.92[EUR][1000 genomes] |
| rs60466683 | 0.92[EUR][1000 genomes] |
| rs60994441 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6667891 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs6683228 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs7411007 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3452322 | chr1:71237020-71240689 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | esv3452319 | chr1:71237194-71240416 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv3452323 | chr1:71237208-71240443 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3452321 | chr1:71237251-71240423 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv17158 | chr1:71237358-71240311 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv3452324 | chr1:71237364-71240328 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:71238800-71243400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr1:71239400-71240000 | Enhancers | K562 | blood |
