Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92946105..92948838-chr1:92954798..92958203,3	K562	blood:
2	chr1:92949029..92951735-chr1:92954575..92957458,2	K562	blood:

Variant related genes	Relation type
ENSG00000162676	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1003209	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10127800	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10159031	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10465755	0.84[ASN][1000 genomes]
rs11166542	1.00[CEU][hapmap]
rs12075243	1.00[CEU][hapmap]
rs12098095	1.00[CEU][hapmap]
rs12563400	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12564335	0.84[ASN][1000 genomes]
rs12564911	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12565259	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12568629	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17131621	1.00[CEU][hapmap]
rs17131636	1.00[CEU][hapmap]
rs2151575	0.84[ASN][1000 genomes]
rs56144352	0.84[ASN][1000 genomes]
rs61288876	0.84[ASN][1000 genomes]
rs61457032	0.84[ASN][1000 genomes]
rs6662565	1.00[CEU][hapmap]
rs6681027	1.00[CEU][hapmap]
rs6695475	1.00[CEU][hapmap]
rs6699723	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs74101167	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74101199	0.84[ASN][1000 genomes]
rs74102921	0.84[ASN][1000 genomes]
rs74102923	0.84[ASN][1000 genomes]
rs7529971	1.00[CEU][hapmap]
rs7535171	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7535181	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92952800-92991400	Weak transcription	Pancreas	Pancrea
2	chr1:92953200-92957600	Weak transcription	HepG2	liver
3	chr1:92953200-92960400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:92954000-92960200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:92954000-92960400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:92954200-92960000	Weak transcription	Fetal Thymus	thymus
7	chr1:92955000-92959400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr1:92955600-92960000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:92955800-92957000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:92956000-92956400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:92956000-92956400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr1:92956000-92956400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr1:92956000-92956400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr1:92956000-92956600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr1:92956000-92957400	Enhancers	Primary T cells from cord blood	blood
16	chr1:92956200-92956400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr1:92956200-92956400	Enhancers	Stomach Mucosa	stomach
18	chr1:92956200-92956400	Enhancers	Monocytes-CD14+_RO01746	blood

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