Variant report

Variant	rs12569120
Chromosome Location	chr1:210668216-210668217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11119524	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs11119525	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11802275	0.88[ASN][1000 genomes]
rs12021963	0.94[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs12034655	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12037995	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12239285	0.94[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs4845036	0.82[JPT][hapmap]
rs6675248	0.89[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs6692361	0.81[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7354945	0.81[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs74156184	0.83[AFR][1000 genomes]
rs74156196	0.88[ASN][1000 genomes]
rs7513126	0.81[JPT][hapmap]
rs7534700	0.94[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873147	chr1:210665583-210696806	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210653800-210678800	Weak transcription	HSMM	muscle
3	chr1:210657000-210669600	Weak transcription	Brain Substantia Nigra	brain
4	chr1:210663600-210669600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:210663600-210672400	Weak transcription	HSMMtube	muscle
6	chr1:210664800-210669000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:210666000-210669000	Weak transcription	Osteobl	bone
8	chr1:210667600-210672400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:210668000-210674000	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links