The 2.0 version of rSNPBase

Variant report

Variant rs12569963
Chromosome Location chr10:119125417-119125418
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:119100200-119131000 Weak transcription Fetal Muscle Leg muscle
2 chr10:119102400-119131400 Weak transcription Psoas Muscle Psoas
3 chr10:119107200-119131400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr10:119109400-119130000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr10:119111800-119129000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr10:119112600-119132800 Weak transcription Gastric stomach
7 chr10:119114200-119128200 Weak transcription Thymus Thymus
8 chr10:119115200-119126600 Weak transcription Fetal Thymus thymus
9 chr10:119119200-119126000 Weak transcription Pancreas Pancrea
10 chr10:119119200-119127200 Enhancers NHEK skin
11 chr10:119119600-119127200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr10:119119800-119126200 Enhancers Rectal Mucosa Donor 31 rectum
13 chr10:119120000-119130800 Weak transcription Brain Anterior Caudate brain
14 chr10:119120000-119132200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr10:119121000-119127200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
16 chr10:119121400-119130000 Enhancers Fetal Intestine Large intestine
17 chr10:119121600-119130600 Enhancers HepG2 liver
18 chr10:119122400-119130000 Enhancers Fetal Intestine Small intestine
19 chr10:119122800-119126600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr10:119122800-119126800 Enhancers Primary T killer naive cells fromperipheralblood blood
21 chr10:119123000-119128200 Enhancers Primary T helper cells PMA-I stimulated --
22 chr10:119123000-119129200 Weak transcription Brain Germinal Matrix brain
23 chr10:119123200-119126600 Enhancers Primary T helper naive cells fromperipheralblood blood
24 chr10:119123200-119127400 Enhancers Primary T helper 17 cells PMA-I stimulated --
25 chr10:119123400-119126600 Enhancers Primary hematopoietic stem cells short term culture blood
26 chr10:119123600-119125800 Enhancers Fetal Kidney kidney
27 chr10:119123600-119126600 Enhancers Hela-S3 cervix
28 chr10:119123600-119130400 Weak transcription Brain Substantia Nigra brain
29 chr10:119123800-119131000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr10:119123800-119131000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr10:119123800-119131600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr10:119124000-119126200 Enhancers HUVEC blood vessel
33 chr10:119124000-119128600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
34 chr10:119124000-119129000 Weak transcription HSMM muscle
35 chr10:119124000-119129200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr10:119124000-119129200 Weak transcription NHDF-Ad bronchial
37 chr10:119124000-119132000 Weak transcription H1 Cell Line embryonic stem cell
38 chr10:119124200-119125800 Enhancers Primary T killer memory cells from peripheral blood blood
39 chr10:119124200-119126800 Enhancers Primary T helper naive cells from peripheral blood blood
40 chr10:119124200-119127400 Enhancers Primary hematopoietic stem cells blood
41 chr10:119124200-119129000 Weak transcription Fetal Brain Male brain
42 chr10:119124200-119130000 Weak transcription Adipose Nuclei Adipose
43 chr10:119124200-119131000 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr10:119124200-119131000 Weak transcription Small Intestine intestine
45 chr10:119124200-119131600 Weak transcription iPS-15b Cell Line embryonic stem cell
46 chr10:119124400-119126000 Enhancers Duodenum Mucosa Duodenum
47 chr10:119124400-119126000 Enhancers Monocytes-CD14+_RO01746 blood
48 chr10:119124400-119126200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr10:119124400-119126200 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr10:119124400-119126600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015