Variant report

Variant	rs12574410
Chromosome Location	chr11:47169228-47169229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47168309..47170720-chr11:47177282..47180012,2	MCF-7	breast:
2	chr11:47168259..47170256-chr11:47174953..47177939,2	K562	blood:

Variant related genes	Relation type
ENSG00000149179	Chromatin interaction

Extended variants
information (count: 121 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10466478	0.86[CHB][hapmap]
rs10501319	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1051006	0.80[CEU][hapmap]
rs1060573	0.86[CHB][hapmap]
rs10742797	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10769225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10769226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10769227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10769228	0.83[ASN][1000 genomes]
rs10769234	0.86[CHB][hapmap]
rs10769248	0.88[ASN][1000 genomes]
rs10769253	0.80[CEU][hapmap]
rs10838640	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838641	0.83[ASN][1000 genomes]
rs10838644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10838646	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10838652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10838658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10838660	0.86[CHB][hapmap]
rs10838662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10838663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838664	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs10838686	0.80[CEU][hapmap]
rs10838689	0.80[CEU][hapmap]
rs11039074	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs11039080	0.92[ASN][1000 genomes]
rs11039081	0.93[ASN][1000 genomes]
rs11039097	0.86[CHB][hapmap]
rs11039098	0.84[ASN][1000 genomes]
rs11039105	0.86[CHB][hapmap]
rs11039112	0.86[CHB][hapmap]
rs11039119	0.86[CHB][hapmap]
rs11600668	0.86[CHB][hapmap]
rs11601798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11603373	0.95[ASN][1000 genomes]
rs12224096	0.82[CHB][hapmap]
rs12417519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12796744	0.86[CHB][hapmap]
rs17790204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1872896	0.86[CHB][hapmap]
rs2029298	0.81[CHB][hapmap]
rs2087215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2242261	1.00[CEU][hapmap]
rs2242262	1.00[CEU][hapmap]
rs2279238	1.00[CEU][hapmap]
rs2279438	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2279439	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2290146	0.82[CEU][hapmap]
rs2290148	0.80[CEU][hapmap]
rs2306353	1.00[CEU][hapmap]
rs2633080	1.00[CEU][hapmap]
rs3729802	0.85[CEU][hapmap]
rs3758666	0.86[ASN][1000 genomes]
rs3758667	0.82[ASN][1000 genomes]
rs3781619	1.00[CEU][hapmap]
rs3824866	1.00[CEU][hapmap]
rs3922684	0.96[ASN][1000 genomes]
rs4269876	0.96[ASN][1000 genomes]
rs4315028	0.93[ASN][1000 genomes]
rs4394802	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4494268	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4498951	0.96[ASN][1000 genomes]
rs4528282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4548577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4567413	0.81[CHB][hapmap]
rs4576779	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4587689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4752815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4752816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4752951	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4752957	0.86[CHB][hapmap]
rs4752962	0.83[CHB][hapmap]
rs4752965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752967	0.83[CHB][hapmap]
rs4752968	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4752969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4752977	0.80[CEU][hapmap]
rs4752983	0.80[CEU][hapmap]
rs61896133	0.96[ASN][1000 genomes]
rs61896136	0.96[ASN][1000 genomes]
rs61897787	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61897844	0.88[ASN][1000 genomes]
rs61897857	0.86[ASN][1000 genomes]
rs6485715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6485716	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6485726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6485739	0.86[CHB][hapmap]
rs7103581	0.86[CHB][hapmap]
rs7108822	0.87[ASN][1000 genomes]
rs7108902	0.86[CHB][hapmap]
rs7111270	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7112854	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7114683	0.92[ASN][1000 genomes]
rs7118396	1.00[CEU][hapmap]
rs7121418	0.86[CHB][hapmap]
rs7123632	0.82[ASN][1000 genomes]
rs7124648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7125807	0.86[CHB][hapmap]
rs7126005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7127741	0.92[ASN][1000 genomes]
rs7128650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7130006	1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs7130947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7395496	1.00[CEU][hapmap]
rs747650	0.86[CHB][hapmap]
rs753992	0.80[CEU][hapmap]
rs7929688	0.80[ASN][1000 genomes]
rs7931260	0.86[CHB][hapmap]
rs7935346	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7937101	0.81[CHB][hapmap]
rs7937410	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7938169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7939786	0.80[ASN][1000 genomes]
rs7940240	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7945315	0.86[CHB][hapmap]
rs7946709	0.86[CHB][hapmap]
rs7950753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7951979	0.95[ASN][1000 genomes]
rs830084	1.00[CEU][hapmap]
rs901747	0.95[ASN][1000 genomes]
rs923324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12574410	ACP2	Cis_1M	lymphoblastoid	RTeQTL
rs12574410	DDB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47143600-47175200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:47145200-47174800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:47149000-47170400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:47149400-47173200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:47149600-47170400	Weak transcription	Esophagus	oesophagus
6	chr11:47151200-47170600	Weak transcription	Gastric	stomach
7	chr11:47153000-47174400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:47153400-47174800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:47155400-47170200	Weak transcription	Stomach Mucosa	stomach
10	chr11:47155600-47170200	Weak transcription	Small Intestine	intestine
11	chr11:47155600-47174400	Weak transcription	Fetal Brain Male	brain
12	chr11:47157600-47170400	Weak transcription	Colonic Mucosa	Colon
13	chr11:47157800-47169800	Weak transcription	Brain Germinal Matrix	brain
14	chr11:47158000-47174800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:47158800-47175000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:47159400-47171200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:47159600-47174000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:47159800-47174200	Weak transcription	Primary B cells from cord blood	blood
19	chr11:47160000-47169600	Weak transcription	Lung	lung
20	chr11:47160000-47170400	Weak transcription	Adipose Nuclei	Adipose
21	chr11:47160000-47171000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:47160000-47174000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr11:47160000-47176400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:47160200-47169800	Weak transcription	HepG2	liver
25	chr11:47160200-47170400	Weak transcription	Fetal Brain Female	brain
26	chr11:47160200-47174000	Weak transcription	Primary T cells from cord blood	blood
27	chr11:47160200-47174000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:47160200-47174200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:47160400-47169600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:47160400-47170600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:47161400-47169800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:47161600-47169600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:47161600-47170000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:47161600-47170400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:47161600-47170400	Weak transcription	Fetal Thymus	thymus
36	chr11:47161600-47173800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:47161600-47174400	Weak transcription	Spleen	Spleen
38	chr11:47161600-47174600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:47161600-47176000	Weak transcription	Dnd41	blood
40	chr11:47161800-47169400	Weak transcription	Fetal Intestine Large	intestine
41	chr11:47161800-47170200	Weak transcription	Brain Angular Gyrus	brain
42	chr11:47161800-47170600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:47161800-47174000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:47162800-47170200	Weak transcription	Hela-S3	cervix
45	chr11:47164200-47175000	Weak transcription	HUVEC	blood vessel
46	chr11:47164400-47174400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr11:47164800-47174200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:47165000-47169600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:47165000-47169600	Weak transcription	Brain Anterior Caudate	brain
50	chr11:47165000-47169800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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