Variant report

Variant	rs12574471
Chromosome Location	chr11:113316236-113316237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2440390	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs60599314	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556444	chr11:113234432-113383394	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv898394	chr11:113298339-113341391	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv1821565	chr11:113306765-113331532	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113311000-113316400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:113313400-113318800	Weak transcription	Brain Anterior Caudate	brain
3	chr11:113315000-113320600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:113315200-113317600	Enhancers	Colon Smooth Muscle	Colon
5	chr11:113315200-113317600	Enhancers	Fetal Stomach	stomach
6	chr11:113315200-113317600	Enhancers	Rectal Smooth Muscle	rectum
7	chr11:113315400-113316400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:113315400-113316400	Weak transcription	NHEK	skin
9	chr11:113315400-113317400	Enhancers	Stomach Smooth Muscle	stomach
10	chr11:113316000-113320200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:113316200-113319800	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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