Variant report

Variant	rs12576915
Chromosome Location	chr11:17513943-17513944
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17513527..17517514-chr11:17518816..17522718,5	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12278908	0.91[ASN][1000 genomes]
rs12278956	0.91[ASN][1000 genomes]
rs2072224	0.85[AMR][1000 genomes]
rs2072226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2072231	0.82[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2072232	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2072233	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2355018	0.91[ASN][1000 genomes]
rs2355020	0.85[AMR][1000 genomes]
rs4756894	0.87[AMR][1000 genomes]
rs4756896	0.85[AMR][1000 genomes]
rs4756897	0.85[AMR][1000 genomes]
rs4757533	0.87[AMR][1000 genomes]
rs4757536	0.85[AMR][1000 genomes]
rs57527755	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58158338	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6486372	0.91[ASN][1000 genomes]
rs6486374	0.87[AMR][1000 genomes]
rs6486375	0.87[AMR][1000 genomes]
rs6486376	0.87[AMR][1000 genomes]
rs6486377	0.87[AMR][1000 genomes]
rs886294	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv467714	chr11:17513147-17521825	Weak transcription Bivalent Enhancer Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553585	chr11:17513147-17521825	Bivalent Enhancer Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17507800-17515800	Weak transcription	Gastric	stomach
2	chr11:17508800-17515600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:17511200-17526000	Weak transcription	Brain Substantia Nigra	brain
4	chr11:17512400-17515200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr11:17512600-17530000	Weak transcription	Right Atrium	heart
6	chr11:17513400-17515200	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr11:17513600-17514200	Enhancers	Right Ventricle	heart
8	chr11:17513600-17514800	Enhancers	Pancreas	Pancrea
9	chr11:17513600-17530600	Strong transcription	Fetal Intestine Small	intestine

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