Variant report

Variant	rs12577786
Chromosome Location	chr11:76415789-76415790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1149597	1.00[ASW][hapmap]
rs1149599	1.00[ASW][hapmap]
rs1149618	1.00[ASW][hapmap]
rs11607917	0.81[JPT][hapmap]
rs1224955	1.00[ASW][hapmap]
rs12422144	1.00[AFR][1000 genomes]
rs4445658	0.86[JPT][hapmap]
rs6592662	0.86[JPT][hapmap]
rs733454	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1047069	chr11:76367686-76420813	Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv1850014	chr11:76384895-76464814	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76409000-76416600	Enhancers	Placenta	Placenta
2	chr11:76413200-76416800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:76413400-76416400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:76413400-76418400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:76413600-76418200	Enhancers	K562	blood
6	chr11:76414600-76416000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:76414600-76416400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:76414600-76416600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:76415000-76416400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:76415200-76415800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:76415200-76415800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr11:76415400-76415800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:76415400-76416800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr11:76415600-76415800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr11:76415600-76415800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr11:76415600-76415800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr11:76415600-76415800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr11:76415600-76416000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr11:76415600-76417600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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